RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 KDM3BQ7LBC6 1761 aa18.49■□□□□ 0.55
NKX3-1-202ENST00000523261 ZNF280AP59817 542 aaPredicted RBP18.48■□□□□ 0.55
NKX3-1-202ENST00000523261 SREBF2Q12772 1141 aa18.48■□□□□ 0.55
NKX3-1-202ENST00000523261 MKRN3Q13064 507 aaKnown RBP18.48■□□□□ 0.55
NKX3-1-202ENST00000523261 NSFL1CQ9UNZ2 370 aaKnown RBP18.48■□□□□ 0.55
NKX3-1-202ENST00000523261 PITPNM2Q9BZ72 1349 aa18.48■□□□□ 0.55
NKX3-1-202ENST00000523261 C6orf229H3BNL8 230 aa18.47■□□□□ 0.55
NKX3-1-202ENST00000523261 ZNF609O15014 1411 aa18.47■□□□□ 0.55
NKX3-1-202ENST00000523261 EIF4A1P60842 406 aaKnown RBP18.46■□□□□ 0.55
NKX3-1-202ENST00000523261 LRP10Q7Z4F1 713 aa18.46■□□□□ 0.55
NKX3-1-202ENST00000523261 SLC17A8Q8NDX2 589 aa18.46■□□□□ 0.55
NKX3-1-202ENST00000523261 A0A0C4DFX4 3053 aa18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 NLRP10Q86W26 655 aa18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 ARMC5Q96C12 935 aa18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 OTUD5Q96G74 571 aa18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 SCAF8Q9UPN6 1271 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 ERBB4Q15303 1308 aa18.45■□□□□ 0.54
NKX3-1-202ENST00000523261 GPSM2P81274 684 aa18.44■□□□□ 0.54
NKX3-1-202ENST00000523261 PRAMEF18Q5VWM3 479 aa18.44■□□□□ 0.54
NKX3-1-202ENST00000523261 EYA3Q99504 573 aa18.44■□□□□ 0.54
NKX3-1-202ENST00000523261 TTLL12Q14166 644 aaPredicted RBP18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 AGBL3Q8NEM8 1001 aa18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 CELF1Q92879 486 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 THUMPD2Q9BTF0 503 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 TRMT112Q9UI30 125 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 PTPN22Q9Y2R2 807 aa18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 COL4A1P02462 1669 aa18.43■□□□□ 0.54
NKX3-1-202ENST00000523261 ALDH1A1P00352 501 aa18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 RSBN1LQ6PCB5 846 aaPredicted RBP18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 TBC1D16Q8TBP0 767 aa18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 PNISRQ8TF01 805 aaKnown RBP18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 GMLQ99445 158 aa18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 MYOZ2Q9NPC6 264 aa18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 RANBP2P49792 3224 aaKnown RBP18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 SH3TC1Q8TE82 1336 aa18.42■□□□□ 0.54
NKX3-1-202ENST00000523261 H0YGN5 161 aa18.41■□□□□ 0.54
NKX3-1-202ENST00000523261 PTPN12Q05209 780 aaKnown RBP18.41■□□□□ 0.54
NKX3-1-202ENST00000523261 PDIA6Q15084 440 aa18.41■□□□□ 0.54
NKX3-1-202ENST00000523261 NECTIN2Q92692 538 aa18.41■□□□□ 0.54
NKX3-1-202ENST00000523261 PSME4Q14997 1843 aa18.4■□□□□ 0.54
NKX3-1-202ENST00000523261 SPRYD7Q5W111 196 aa18.4■□□□□ 0.54
NKX3-1-202ENST00000523261 ZC3H12CQ9C0D7 883 aaKnown RBP18.4■□□□□ 0.54
NKX3-1-202ENST00000523261 USP17L8P0C7I0 530 aa18.39■□□□□ 0.53
NKX3-1-202ENST00000523261 U2AF1L5P0DN76 240 aaPredicted RBP18.39■□□□□ 0.53
NKX3-1-202ENST00000523261 U2AF1Q01081 240 aaKnown RBP eCLIP18.39■□□□□ 0.53
NKX3-1-202ENST00000523261 TCIRG1Q13488 830 aa18.39■□□□□ 0.53
NKX3-1-202ENST00000523261 HSP90AB3PQ58FF7 597 aa18.39■□□□□ 0.53
NKX3-1-202ENST00000523261 PROSER3Q2NL68 480 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 IFNL1Q8IU54 200 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 ERO1AQ96HE7 468 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 TMEM106CQ9BVX2 250 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 NUDCQ9Y266 331 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 COL6A3P12111 3177 aa18.38■□□□□ 0.53
NKX3-1-202ENST00000523261 ANXA1P04083 346 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 NF2P35240 595 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 CNGB1Q14028 1251 aaPredicted RBP18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 SF3B3Q15393 1217 aaKnown RBP18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 NBPF9Q3BBW0 867 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 LDLRAD1Q5T700 205 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 CHRDL2Q6WN34 429 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 CD99L2Q8TCZ2 262 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 ZNF333Q96JL9 665 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 CFAP53Q96M91 514 aa18.37■□□□□ 0.53
NKX3-1-202ENST00000523261 MANSC4A6NHS7 340 aaPredicted RBP18.36■□□□□ 0.53
NKX3-1-202ENST00000523261 INHBEP58166 350 aa18.36■□□□□ 0.53
NKX3-1-202ENST00000523261 EFCC1Q9HA90 598 aa18.36■□□□□ 0.53
NKX3-1-202ENST00000523261 PODXL2Q9NZ53 605 aa18.36■□□□□ 0.53
NKX3-1-202ENST00000523261 DLG5Q8TDM6 1919 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 G3V3G9 751 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 IGF2BP3O00425 579 aaKnown RBP eCLIP18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 CAP1Q01518 475 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 DCAF8Q5TAQ9 597 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 ARMC9Q7Z3E5 817 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 ZNF428Q96B54 188 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 RBM27Q9P2N5 1060 aaKnown RBP18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 LAMB1P07942 1786 aa18.35■□□□□ 0.53
NKX3-1-202ENST00000523261 PRKG1Q13976 671 aa18.34■□□□□ 0.53
NKX3-1-202ENST00000523261 COPS6Q7L5N1 327 aa18.34■□□□□ 0.53
NKX3-1-202ENST00000523261 UFL1O94874 794 aa18.33■□□□□ 0.52
NKX3-1-202ENST00000523261 EIF2S2P20042 333 aaKnown RBP18.33■□□□□ 0.52
NKX3-1-202ENST00000523261 RPS8P62241 208 aaKnown RBP18.33■□□□□ 0.52
NKX3-1-202ENST00000523261 AIMP1Q12904 312 aaKnown RBP18.32■□□□□ 0.52
NKX3-1-202ENST00000523261 CRHR2Q13324 411 aa18.32■□□□□ 0.52
NKX3-1-202ENST00000523261 XAGE3Q8WTP9 111 aa18.32■□□□□ 0.52
NKX3-1-202ENST00000523261 USP17L3A6NCW0 530 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 USP17L4A6NCW7 530 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 WNT10BO00744 389 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 USP17L1Q7RTZ2 530 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 FAM89AQ96GI7 184 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 GGA1Q9UJY5 639 aa18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 ANGEL1Q9UNK9 670 aaKnown RBP18.31■□□□□ 0.52
NKX3-1-202ENST00000523261 ZBTB48P10074 688 aaPredicted RBP18.3■□□□□ 0.52
NKX3-1-202ENST00000523261 SP3Q02447 781 aa18.3■□□□□ 0.52
NKX3-1-202ENST00000523261 SLC10A4Q96EP9 437 aa18.3■□□□□ 0.52
NKX3-1-202ENST00000523261 ANKIB1Q9P2G1 1089 aa18.3■□□□□ 0.52
NKX3-1-202ENST00000523261 MNX1P50219 401 aaPredicted RBP18.29■□□□□ 0.52
NKX3-1-202ENST00000523261 SLC4A8Q2Y0W8 1093 aa18.29■□□□□ 0.52
NKX3-1-202ENST00000523261 SLC9C1Q4G0N8 1177 aa18.29■□□□□ 0.52
NKX3-1-202ENST00000523261 WNK4Q96J92 1243 aa18.29■□□□□ 0.52
NKX3-1-202ENST00000523261 PRO3102Q9H379 93 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms