RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 HOOK3Q86VS8 718 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 C2CD5Q86YS7 1000 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 CCDC191Q8NCU4 936 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 NEK1Q96PY6 1258 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 ABCC1P33527 1531 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 MCM9Q9NXL9 1143 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 ZFYVE16Q7Z3T8 1539 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 PRC1O43663 620 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 PRPF40AO75400 957 aaKnown RBP4.88□□□□□ -1.63
VCAN-209ENST00000513016 GNA11P29992 359 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 CCDC91Q7Z6B0 441 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 KCNG1Q9UIX4 513 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 COMMD10Q9Y6G5 202 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 ZBTB43O43298 467 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 IDEP14735 1019 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 CTNNA2P26232 953 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 NFKBIBQ15653 356 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 RTN1Q16799 776 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 CC2D2BQ6DHV5 1058 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 MBIPQ9NS73 344 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 SYCP2Q9BX26 1530 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 NAPAP54920 295 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 GIGYF2Q6Y7W6 1299 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 ANO10Q9NW15 660 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 WWC3Q9ULE0 1092 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 SLC9C2Q5TAH2 1124 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 SMCR8Q8TEV9 937 aaPredicted RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 ORC3Q9UBD5 711 aaPredicted RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 TMEM2Q9UHN6 1383 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 BACH1O14867 736 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 USO1O60763 962 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 RHPN1Q8TCX5 695 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 LIMCH1Q9UPQ0 1083 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 NKTRP30414 1462 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 SBNO1A3KN83 1393 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 ACTN2P35609 894 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 CAVIN1Q6NZI2 390 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 ARMC9Q7Z3E5 817 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 DDX12PQ92771 950 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 ORAI2Q96SN7 254 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 NBPF3Q9H094 633 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 DNAJC5Q9H3Z4 198 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 TTC12Q9H892 705 aaPredicted RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 PRKAG2Q9UGJ0 569 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 MCMDC2Q4G0Z9 681 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 TBC1D5Q92609 795 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 EYA1Q99502 592 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 SLC26A6Q9BXS9 759 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.87□□□□□ -1.63
VCAN-209ENST00000513016 NPHP4O75161 1426 aaPredicted RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 MTIF2P46199 727 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 CCDC83Q8IWF9 413 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 RBM28Q9NW13 759 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 RBM25P49756 843 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 IFI16Q16666 785 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 MTHFSDQ2M296 383 aaKnown RBP4.87□□□□□ -1.63
VCAN-209ENST00000513016 TCERG1LQ5VWI1 586 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 CNNM3Q8NE01 707 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 PLVAPQ9BX97 442 aa4.87□□□□□ -1.63
VCAN-209ENST00000513016 CFAP74Q9C0B2 1584 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 HEATR3Q7Z4Q2 680 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 CDAN1Q8IWY9 1227 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 GOPCQ9HD26 462 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 PUF60Q9UHX1 559 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 ADAMTS12P58397 1594 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 PATL2C9JE40 543 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 ATP8B2P98198 1209 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 PUM3Q15397 648 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 MCTP2Q6DN12 878 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 PLCD3Q8N3E9 789 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 TSNARE1Q96NA8 513 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 SYNCQ9H7C4 482 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 WDR97A6NE52 1622 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 ERLIN1O75477 346 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 MRE11P49959 708 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 SLC8A3P57103 927 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 CCNA1P78396 465 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 SUPT20HL1Q3ZLR7 823 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 KRT79Q5XKE5 535 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 FMNL3Q8IVF7 1028 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 TAOK3Q9H2K8 898 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 RTN4Q9NQC3 1192 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 IQSEC3Q9UPP2 1182 aaPredicted RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 BIVM-ERCC5R4GMW8 1640 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 NOP56O00567 594 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 DNM2P50570 870 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 SNX16P57768 344 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 EXOC1Q9NV70 894 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.86□□□□□ -1.63
VCAN-209ENST00000513016 RNF113AO15541 343 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 SMARCA5O60264 1052 aaPredicted RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 ZNF790Q6PG37 636 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 POLKQ9UBT6 870 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 NR1I2O75469 434 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 PARP1P09874 1014 aaKnown RBP4.86□□□□□ -1.63
VCAN-209ENST00000513016 MAP3K11Q16584 847 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 HS2ST1Q7LGA3 356 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 ZNF354CQ86Y25 554 aa4.86□□□□□ -1.63
VCAN-209ENST00000513016 THRAP3Q9Y2W1 955 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms