RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 ECE2O60344 883 aa13.21□□□□□ -0.29
NEDD9-213ENST00000512665 GPTP24298 496 aa13.21□□□□□ -0.29
NEDD9-213ENST00000512665 SLC9C1Q4G0N8 1177 aa13.21□□□□□ -0.29
NEDD9-213ENST00000512665 AGBL3Q8NEM8 1001 aa13.21□□□□□ -0.29
NEDD9-213ENST00000512665 CD99L2Q8TCZ2 262 aa13.21□□□□□ -0.29
NEDD9-213ENST00000512665 SCN9AQ15858 1988 aa13.2□□□□□ -0.3
NEDD9-213ENST00000512665 SOX1O00570 391 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-213ENST00000512665 DIAPH1O60610 1272 aaKnown RBP13.2□□□□□ -0.3
NEDD9-213ENST00000512665 ZBTB48P10074 688 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-213ENST00000512665 NF2P35240 595 aa13.2□□□□□ -0.3
NEDD9-213ENST00000512665 SLC4A8Q2Y0W8 1093 aa13.2□□□□□ -0.3
NEDD9-213ENST00000512665 LDLRAD1Q5T700 205 aa13.2□□□□□ -0.3
NEDD9-213ENST00000512665 GIGYF2Q6Y7W6 1299 aaKnown RBP13.2□□□□□ -0.3
NEDD9-213ENST00000512665 PANK3Q9H999 370 aa13.2□□□□□ -0.3
NEDD9-213ENST00000512665 ZNF646O15015 1829 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-213ENST00000512665 SPTBN5Q9NRC6 3674 aaKnown RBP13.19□□□□□ -0.3
NEDD9-213ENST00000512665 PSME4Q14997 1843 aa13.19□□□□□ -0.3
NEDD9-213ENST00000512665 MKRN3Q13064 507 aaKnown RBP13.19□□□□□ -0.3
NEDD9-213ENST00000512665 ARHGEF6Q15052 776 aa13.19□□□□□ -0.3
NEDD9-213ENST00000512665 DDX46Q7L014 1031 aaKnown RBP13.19□□□□□ -0.3
NEDD9-213ENST00000512665 SP3Q02447 781 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 PTPN12Q05209 780 aaKnown RBP13.18□□□□□ -0.3
NEDD9-213ENST00000512665 TTLL12Q14166 644 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-213ENST00000512665 ARMC9Q7Z3E5 817 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 UBE2Q1Q7Z7E8 422 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 LRCH3Q96II8 777 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 EYA3Q99504 573 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
NEDD9-213ENST00000512665 MYOZ2Q9NPC6 264 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 PRDM6Q9NQX0 595 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 KCNQ5Q9NR82 932 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 NR2E3Q9Y5X4 410 aa13.18□□□□□ -0.3
NEDD9-213ENST00000512665 IGF2BP3O00425 579 aaKnown RBP eCLIP13.17□□□□□ -0.3
NEDD9-213ENST00000512665 TTLL7Q6ZT98 887 aa13.17□□□□□ -0.3
NEDD9-213ENST00000512665 DPF3Q92784 378 aa13.17□□□□□ -0.3
NEDD9-213ENST00000512665 GMLQ99445 158 aa13.17□□□□□ -0.3
NEDD9-213ENST00000512665 HTATIP2Q9BUP3 242 aa13.17□□□□□ -0.3
NEDD9-213ENST00000512665 COL3A1P02461 1466 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-213ENST00000512665 ERBB4Q15303 1308 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 UNCXA6NJT0 531 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 ZBTB7BO15156 539 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-213ENST00000512665 USP17L8P0C7I0 530 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 CAP1Q01518 475 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 CRHR2Q13324 411 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 OTUD7BQ6GQQ9 843 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 RSBN1LQ6PCB5 846 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-213ENST00000512665 SHISA4Q96DD7 197 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 ZBTB3Q9H5J0 574 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 POLLQ9UGP5 575 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 PTCH2Q9Y6C5 1203 aa13.16□□□□□ -0.3
NEDD9-213ENST00000512665 TAF1P21675 1872 aa13.15□□□□□ -0.3
NEDD9-213ENST00000512665 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.15□□□□□ -0.3
NEDD9-213ENST00000512665 NSFL1CQ9UNZ2 370 aaKnown RBP13.15□□□□□ -0.3
NEDD9-213ENST00000512665 COL1A1P02452 1464 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-213ENST00000512665 MAP3K11Q16584 847 aa13.14□□□□□ -0.31
NEDD9-213ENST00000512665 DOK7Q18PE1 504 aa13.14□□□□□ -0.31
NEDD9-213ENST00000512665 DEFB123Q8N688 67 aa13.14□□□□□ -0.31
NEDD9-213ENST00000512665 NKX2-3Q8TAU0 364 aa13.14□□□□□ -0.31
NEDD9-213ENST00000512665 TESPA1A2RU30 521 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-213ENST00000512665 WTIPA6NIX2 430 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-213ENST00000512665 C6orf229H3BNL8 230 aa13.13□□□□□ -0.31
NEDD9-213ENST00000512665 RIMBP2O15034 1052 aa13.13□□□□□ -0.31
NEDD9-213ENST00000512665 PRAMEF18Q5VWM3 479 aa13.13□□□□□ -0.31
NEDD9-213ENST00000512665 NGEFQ8N5V2 710 aa13.13□□□□□ -0.31
NEDD9-213ENST00000512665 TBC1D16Q8TBP0 767 aa13.13□□□□□ -0.31
NEDD9-213ENST00000512665 MMP14P50281 582 aa13.12□□□□□ -0.31
NEDD9-213ENST00000512665 AMER1Q5JTC6 1135 aaPredicted RBP13.12□□□□□ -0.31
NEDD9-213ENST00000512665 WNK4Q96J92 1243 aa13.12□□□□□ -0.31
NEDD9-213ENST00000512665 MTMR10Q9NXD2 777 aa13.12□□□□□ -0.31
NEDD9-213ENST00000512665 PODXL2Q9NZ53 605 aa13.12□□□□□ -0.31
NEDD9-213ENST00000512665 KNSTRNQ9Y448 316 aa13.12□□□□□ -0.31
NEDD9-213ENST00000512665 GNRH1P01148 92 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 BMP8BP34820 402 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 GPSM2P81274 684 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 SLC10A4Q96EP9 437 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 ZC3H12CQ9C0D7 883 aaKnown RBP13.11□□□□□ -0.31
NEDD9-213ENST00000512665 SSC5DA1L4H1 1573 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 SH3TC1Q8TE82 1336 aa13.11□□□□□ -0.31
NEDD9-213ENST00000512665 HTATSF1O43719 755 aaKnown RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 HCLS1P14317 486 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 GJA8P48165 433 aa13.1□□□□□ -0.31
NEDD9-213ENST00000512665 PRMT2P55345 433 aa13.1□□□□□ -0.31
NEDD9-213ENST00000512665 NBPF9Q3BBW0 867 aa13.1□□□□□ -0.31
NEDD9-213ENST00000512665 LRIT3Q3SXY7 679 aa13.1□□□□□ -0.31
NEDD9-213ENST00000512665 APOBEC3FQ8IUX4 373 aaKnown RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 RTF1Q92541 710 aaKnown RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 ANGEL1Q9UNK9 670 aaKnown RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 SCAF8Q9UPN6 1271 aaKnown RBP13.1□□□□□ -0.31
NEDD9-213ENST00000512665 MUC3AQ02505 3323 aa13.1□□□□□ -0.31
NEDD9-213ENST00000512665 WNT10BO00744 389 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 HSP90AB3PQ58FF7 597 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 LRP10Q7Z4F1 713 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 NLRP10Q86W26 655 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 PHACTR3Q96KR7 559 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 POLR3GLQ9BT43 218 aa13.09□□□□□ -0.31
NEDD9-213ENST00000512665 RRP7AQ9Y3A4 280 aaKnown RBP13.09□□□□□ -0.31
NEDD9-213ENST00000512665 MYL6BP14649 208 aa13.08□□□□□ -0.32
NEDD9-213ENST00000512665 SF3B3Q15393 1217 aaKnown RBP13.08□□□□□ -0.32
NEDD9-213ENST00000512665 TAF7Q15545 349 aaPredicted RBP13.08□□□□□ -0.32
NEDD9-213ENST00000512665 MCM10Q7L590 875 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms