RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GCKRQ14397 625 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 TTLL5Q6EMB2 1281 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 MICU3Q86XE3 530 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 STAP2Q9UGK3 403 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 DLC1Q96QB1 1528 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 USP5P45974 858 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 BEND3Q5T5X7 828 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 LMBRD1Q9NUN5 540 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 GIGYF1O75420 1035 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 IKQ13123 557 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 ATL3Q6DD88 541 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 MRPS27Q92552 414 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 AK7Q96M32 723 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 ANKARQ7Z5J8 1434 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 DZIP1Q86YF9 867 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 PRC1O43663 620 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 CCDC191Q8NCU4 936 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 KIF18AQ8NI77 898 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 CCDC43Q96MW1 224 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 TM6SF1Q9BZW5 370 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 CDC42BPGQ6DT37 1551 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 IQSEC2Q5JU85 1478 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 ZBTB43O43298 467 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 TOP1P11387 765 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 TMTC2Q8N394 836 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 PDCL2Q8N4E4 241 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 DEPDC5O75140 1603 aa12.47□□□□□ -0.41
LIMCH1-205ENST00000503057 KANK3Q6NY19 840 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 SLC9C2Q5TAH2 1124 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 TXLNBQ8N3L3 684 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 SLC26A6Q9BXS9 759 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 PTPRMP28827 1452 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 EYA2O00167 538 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 DYNC1I1O14576 645 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 RUFY1Q96T51 708 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.41
LIMCH1-205ENST00000503057 PTPDC1A2A3K4 754 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 BRD1O95696 1058 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 TNNT1P13805 278 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 CPA1P15085 419 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 TYRO3Q06418 890 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 ALG1Q9BT22 464 aa12.46□□□□□ -0.42
LIMCH1-205ENST00000503057 OFD1O75665 1012 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 SIRT2Q8IXJ6 389 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC144CPQ8IYA2 1237 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC150Q8NCX0 1101 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 FAM227BQ96M60 508 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 LLPHQ9BRT6 129 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 MKNK2Q9HBH9 465 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 ADAMTS2O95450 1211 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 APOBRQ0VD83 1088 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC102BQ68D86 513 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 PYM1Q9BRP8 204 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 RBSNQ9H1K0 784 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 RGS12O14924 1447 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 NEURL1BA8MQ27 555 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 WTAPQ15007 396 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 KRT18P05783 430 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 GNAT2P19087 354 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 ARHGEF40Q8TER5 1519 aa12.45□□□□□ -0.42
LIMCH1-205ENST00000503057 RAB11FIP4Q86YS3 637 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC82Q8N4S0 544 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 ANKIB1Q9P2G1 1089 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 SEC63Q9UGP8 760 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 SYKP43405 635 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 NOLC1Q14978 699 aaKnown RBP eCLIP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 PIBF1Q8WXW3 757 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 PIK3C2BO00750 1634 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 KIF5BP33176 963 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 BRAPQ7Z569 592 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 DZIP3Q86Y13 1208 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 DBNDD2Q9BQY9 259 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 UTP14AQ9BVJ6 771 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 IRS4O14654 1257 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 KCNQ3O43525 872 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 FAM177A1Q8N128 213 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 PDCL3Q9H2J4 239 aa12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 LUC7LQ9NQ29 371 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-205ENST00000503057 CLTCQ00610 1675 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 A0A1B0GUL7 405 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 BIN1O00499 593 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 NLRP5P59047 1200 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 ATP2B2Q01814 1243 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 PDE4BQ07343 736 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 TMC6Q7Z403 805 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 KLHDC4Q8TBB5 520 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 C16orf45Q96MC5 204 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 SLC4A4Q9Y6R1 1079 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 PPFIA3O75145 1194 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 ATP5JP18859 108 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 PIP4K2BP78356 416 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 SPTY2D1Q68D10 685 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 ZNF444Q8N0Y2 327 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 KBTBD3Q8NAB2 608 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 PAXBP1Q9Y5B6 917 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 ZNF496Q96IT1 587 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 DNAJC25Q9H1X3 360 aa12.43□□□□□ -0.42
LIMCH1-205ENST00000503057 ERLIN1O75477 346 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 BMP15O95972 392 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms