RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 GRK4P32298 578 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 CRKLP46109 303 aaKnown RBP6.16□□□□□ -1.42
USP54-216ENST00000498143 MAP3K11Q16584 847 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 SNX27Q96L92 541 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 PICK1Q9NRD5 415 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 ATN1P54259 1190 aaPredicted RBP6.16□□□□□ -1.42
USP54-216ENST00000498143 AMOTQ4VCS5 1084 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 PTPRUQ92729 1446 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.16□□□□□ -1.42
USP54-216ENST00000498143 IBSPP21815 317 aaPredicted RBP6.16□□□□□ -1.42
USP54-216ENST00000498143 GPTP24298 496 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 RDXP35241 583 aaKnown RBP6.16□□□□□ -1.42
USP54-216ENST00000498143 PABPC4Q13310 644 aaKnown RBP eCLIP6.16□□□□□ -1.42
USP54-216ENST00000498143 SAPCD2Q86UD0 394 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 ALADP13716 330 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 FKBP1BP68106 108 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 MFSD14AQ96MC6 490 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 PRDM16Q9HAZ2 1276 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 AHDC1Q5TGY3 1603 aaPredicted RBP6.15□□□□□ -1.42
USP54-216ENST00000498143 ADGRF5Q8IZF2 1346 aa6.15□□□□□ -1.42
USP54-216ENST00000498143 ZRANB2O95218 330 aaKnown RBP eCLIP6.15□□□□□ -1.42
USP54-216ENST00000498143 DEF6Q9H4E7 631 aa6.15□□□□□ -1.42
USP54-216ENST00000498143 SLC5A4Q9NY91 659 aa6.15□□□□□ -1.42
USP54-216ENST00000498143 RAB23Q9ULC3 237 aa6.15□□□□□ -1.42
USP54-216ENST00000498143 LRRFIP2Q9Y608 721 aaKnown RBP6.15□□□□□ -1.42
USP54-216ENST00000498143 CCL15-CCL14A0A0B4J2E2 113 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 CCL15Q16663 113 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 MNS1Q8NEH6 495 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 CARD11Q9BXL7 1154 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 CWC15Q9P013 229 aaKnown RBP6.15□□□□□ -1.43
USP54-216ENST00000498143 ASAP1Q9ULH1 1129 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 LRP5O75197 1615 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 DUOX2Q9NRD8 1548 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 PRAMEF22A3QJZ6 481 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 LPXNO60711 386 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 CCDC152Q4G0S7 254 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 CREBRFQ8IUR6 639 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 SH3TC2Q8TF17 1288 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 MYOM2P54296 1465 aa6.15□□□□□ -1.43
USP54-216ENST00000498143 LIG1P18858 919 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 FOXD4L6Q3SYB3 417 aaPredicted RBP6.14□□□□□ -1.43
USP54-216ENST00000498143 CCDC181Q5TID7 509 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 FOXD4L3Q6VB84 417 aaPredicted RBP6.14□□□□□ -1.43
USP54-216ENST00000498143 TTC21BQ7Z4L5 1316 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 TTC36A6NLP5 189 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 DCDC2CA8MYV0 355 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 F8W031 263 aaPredicted RBP6.14□□□□□ -1.43
USP54-216ENST00000498143 PPIP5K1Q6PFW1 1433 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 TRIM6-TRIM34B2RNG4 842 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 ARHGEF25Q86VW2 580 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 EXOC8Q8IYI6 725 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 TDHQ8IZJ6 230 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 HMX1Q9NP08 348 aaPredicted RBP6.14□□□□□ -1.43
USP54-216ENST00000498143 PRDM4Q9UKN5 801 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 ABCA6Q8N139 1617 aa6.14□□□□□ -1.43
USP54-216ENST00000498143 PSMC4P43686 418 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 RGS3P49796 1198 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 NFIXQ14938 502 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 ANGEL2Q5VTE6 544 aaKnown RBP6.13□□□□□ -1.43
USP54-216ENST00000498143 STYK1Q6J9G0 422 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 GADL1Q6ZQY3 521 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 BIVM-ERCC5R4GMW8 1640 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 DCAF15Q66K64 600 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 RIC3Q7Z5B4 369 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 DNAJC10Q8IXB1 793 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 ADAMTS19Q8TE59 1207 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 IP6K1Q92551 441 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 LRCH3Q96II8 777 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 CCER2I3L3R5 266 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 CTR9Q6PD62 1173 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 FAM43BQ6ZT52 329 aaPredicted RBP6.13□□□□□ -1.43
USP54-216ENST00000498143 H0YHG0 523 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 USP17L8P0C7I0 530 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 GYS1P13807 737 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 SARNPP82979 210 aaKnown RBP6.13□□□□□ -1.43
USP54-216ENST00000498143 AOC3Q16853 763 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 APOBEC3FQ8IUX4 373 aaKnown RBP6.13□□□□□ -1.43
USP54-216ENST00000498143 MYLIPQ8WY64 445 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 RICTORQ6R327 1708 aa6.13□□□□□ -1.43
USP54-216ENST00000498143 ARHGAP31Q2M1Z3 1444 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 ANKRD36BQ8N2N9 1353 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 MRE11P49959 708 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 RRS1Q15050 365 aaKnown RBP6.12□□□□□ -1.43
USP54-216ENST00000498143 MORC1Q86VD1 984 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 HS6ST3Q8IZP7 471 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 TRMT112Q9UI30 125 aaKnown RBP6.12□□□□□ -1.43
USP54-216ENST00000498143 FRMD4BQ9Y2L6 1034 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 ABCC11Q96J66 1382 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 NME9Q86XW9 330 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 NCOR1O75376 2440 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 ANKRD62A6NC57 917 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 MFSD14CQ5VZR4 134 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 OTOP1Q7RTM1 612 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 HSCBQ8IWL3 235 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 MPHOSPH8Q99549 860 aa6.12□□□□□ -1.43
USP54-216ENST00000498143 CGNQ9P2M7 1197 aaKnown RBP6.12□□□□□ -1.43
USP54-216ENST00000498143 A0A1W2PPC1 479 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 WTIPA6NIX2 430 aaPredicted RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 ADCY3O60266 1144 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 EIF2S2P20042 333 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms