RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NID1P14543 1247 aa10.79□□□□□ -0.68
SF3B1-212ENST00000496458 SIK1P57059 783 aa10.79□□□□□ -0.68
SF3B1-212ENST00000496458 FRRS1LQ9P0K9 344 aa10.79□□□□□ -0.68
SF3B1-212ENST00000496458 GHRHP01286 108 aa10.78□□□□□ -0.68
SF3B1-212ENST00000496458 SMG9Q9H0W8 520 aaKnown RBP10.78□□□□□ -0.68
SF3B1-212ENST00000496458 CYP2E1P05181 493 aaPredicted RBP10.77□□□□□ -0.69
SF3B1-212ENST00000496458 AFF1P51825 1210 aaKnown RBP10.77□□□□□ -0.69
SF3B1-212ENST00000496458 ECM1Q16610 540 aa10.77□□□□□ -0.69
SF3B1-212ENST00000496458 COL13A1Q5TAT6 717 aaPredicted RBP10.77□□□□□ -0.69
SF3B1-212ENST00000496458 USP5P45974 858 aa10.76□□□□□ -0.69
SF3B1-212ENST00000496458 HYAL2Q12891 473 aa10.76□□□□□ -0.69
SF3B1-212ENST00000496458 XKR5Q6UX68 686 aa10.76□□□□□ -0.69
SF3B1-212ENST00000496458 KCTD17Q8N5Z5 321 aa10.76□□□□□ -0.69
SF3B1-212ENST00000496458 CNTN3Q9P232 1028 aa10.76□□□□□ -0.69
SF3B1-212ENST00000496458 SPDYE3A6NKU9 549 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 ARHGAP4P98171 946 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 PLD4Q96BZ4 506 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 RBSNQ9H1K0 784 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 KANSL3Q9P2N6 904 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 BRPF3Q9ULD4 1205 aa10.75□□□□□ -0.69
SF3B1-212ENST00000496458 GNEQ9Y223 722 aaKnown RBP10.75□□□□□ -0.69
SF3B1-212ENST00000496458 FAM229AH3BQW9 127 aa10.74□□□□□ -0.69
SF3B1-212ENST00000496458 TRAPPC3LQ5T215 181 aa10.74□□□□□ -0.69
SF3B1-212ENST00000496458 ALYREFQ86V81 257 aaKnown RBP10.74□□□□□ -0.69
SF3B1-212ENST00000496458 GJD3Q8N144 294 aa10.74□□□□□ -0.69
SF3B1-212ENST00000496458 C1orf127Q8N9H9 656 aa10.74□□□□□ -0.69
SF3B1-212ENST00000496458 KRBA1A5PL33 1030 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 SOWAHDA6NJG2 315 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 EHHADHQ08426 723 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 GRIK5Q16478 980 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 SPACA7Q96KW9 195 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 TRAIPQ9BWF2 469 aa10.73□□□□□ -0.69
SF3B1-212ENST00000496458 CES1P23141 567 aa10.72□□□□□ -0.69
SF3B1-212ENST00000496458 PRRT3Q5FWE3 981 aa10.72□□□□□ -0.69
SF3B1-212ENST00000496458 NCAPG2Q86XI2 1143 aa10.72□□□□□ -0.69
SF3B1-212ENST00000496458 TTC9Q92623 222 aa10.72□□□□□ -0.69
SF3B1-212ENST00000496458 NDUFB5O43674 189 aa10.71□□□□□ -0.69
SF3B1-212ENST00000496458 TNFRSF21O75509 655 aa10.71□□□□□ -0.69
SF3B1-212ENST00000496458 KIF4AO95239 1232 aa10.71□□□□□ -0.69
SF3B1-212ENST00000496458 ATP11AP98196 1134 aa10.71□□□□□ -0.69
SF3B1-212ENST00000496458 CHRDQ9H2X0 955 aa10.71□□□□□ -0.69
SF3B1-212ENST00000496458 FOXD3Q9UJU5 478 aaPredicted RBP10.71□□□□□ -0.69
SF3B1-212ENST00000496458 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.71□□□□□ -0.69
SF3B1-212ENST00000496458 PHACTR2O75167 634 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 SPATA31C1P0DKV0 1188 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 TRIM28Q13263 835 aaKnown RBP10.7□□□□□ -0.7
SF3B1-212ENST00000496458 PLA2G4EQ3MJ16 856 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 GDF6Q6KF10 455 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-212ENST00000496458 DMRTC2Q8IXT2 367 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-212ENST00000496458 SNX29Q8TEQ0 813 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 BIN2Q9UBW5 565 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-212ENST00000496458 IVNS1ABPQ9Y6Y0 642 aa10.7□□□□□ -0.7
SF3B1-212ENST00000496458 KCNA1Q09470 495 aa10.69□□□□□ -0.7
SF3B1-212ENST00000496458 GPAT2Q6NUI2 795 aa10.69□□□□□ -0.7
SF3B1-212ENST00000496458 WFDC8Q8IUA0 241 aa10.69□□□□□ -0.7
SF3B1-212ENST00000496458 TRIM33Q9UPN9 1127 aa10.69□□□□□ -0.7
SF3B1-212ENST00000496458 A0A0A0MRY4 1105 aa10.68□□□□□ -0.7
SF3B1-212ENST00000496458 RASSF4Q9H2L5 321 aa10.68□□□□□ -0.7
SF3B1-212ENST00000496458 EREGO14944 169 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 ITGB2P05107 769 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 CEP135Q66GS9 1140 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 CEP120Q8N960 986 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 PMEPA1Q969W9 287 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 SALL4Q9UJQ4 1053 aa10.67□□□□□ -0.7
SF3B1-212ENST00000496458 SMNDC1O75940 238 aaKnown RBP eCLIP10.66□□□□□ -0.7
SF3B1-212ENST00000496458 ACPPP15309 386 aa10.66□□□□□ -0.7
SF3B1-212ENST00000496458 RAC1P63000 192 aa10.66□□□□□ -0.7
SF3B1-212ENST00000496458 CHRNA4P43681 627 aa10.65□□□□□ -0.7
SF3B1-212ENST00000496458 IL22RA1Q8N6P7 574 aa10.65□□□□□ -0.7
SF3B1-212ENST00000496458 TMC1Q8TDI8 760 aa10.65□□□□□ -0.7
SF3B1-212ENST00000496458 PBX4Q9BYU1 374 aa10.65□□□□□ -0.7
SF3B1-212ENST00000496458 LACRTQ9GZZ8 138 aa10.65□□□□□ -0.7
SF3B1-212ENST00000496458 PDIA4P13667 645 aaKnown RBP10.64□□□□□ -0.71
SF3B1-212ENST00000496458 BAG6P46379 1132 aa10.64□□□□□ -0.71
SF3B1-212ENST00000496458 PDE3BQ13370 1112 aa10.64□□□□□ -0.71
SF3B1-212ENST00000496458 GRIK4Q16099 956 aa10.64□□□□□ -0.71
SF3B1-212ENST00000496458 ILDR2Q71H61 639 aa10.64□□□□□ -0.71
SF3B1-212ENST00000496458 FAM129BQ96TA1 746 aa10.64□□□□□ -0.71
SF3B1-212ENST00000496458 C1QTNF9BB2RNN3 333 aa10.63□□□□□ -0.71
SF3B1-212ENST00000496458 APBA3O96018 575 aa10.63□□□□□ -0.71
SF3B1-212ENST00000496458 CD163Q86VB7 1156 aa10.63□□□□□ -0.71
SF3B1-212ENST00000496458 FMR1NBQ8N0W7 255 aaPredicted RBP10.63□□□□□ -0.71
SF3B1-212ENST00000496458 AMOTL2Q9Y2J4 779 aa10.63□□□□□ -0.71
SF3B1-212ENST00000496458 TRPA1O75762 1119 aa10.62□□□□□ -0.71
SF3B1-212ENST00000496458 ELNP15502 786 aa10.62□□□□□ -0.71
SF3B1-212ENST00000496458 DTWD1Q8N5C7 304 aa10.62□□□□□ -0.71
SF3B1-212ENST00000496458 CITED4Q96RK1 184 aa10.62□□□□□ -0.71
SF3B1-212ENST00000496458 ZFYVE28Q9HCC9 887 aa10.62□□□□□ -0.71
SF3B1-212ENST00000496458 GPR182O15218 404 aa10.61□□□□□ -0.71
SF3B1-212ENST00000496458 POLR3DP05423 398 aaPredicted RBP10.61□□□□□ -0.71
SF3B1-212ENST00000496458 EDN3P14138 238 aa10.61□□□□□ -0.71
SF3B1-212ENST00000496458 ADAMTSL4Q6UY14 1074 aa10.61□□□□□ -0.71
SF3B1-212ENST00000496458 HHIPQ96QV1 700 aa10.61□□□□□ -0.71
SF3B1-212ENST00000496458 DZANK1Q9NVP4 752 aa10.61□□□□□ -0.71
SF3B1-212ENST00000496458 MSTNO14793 375 aa10.6□□□□□ -0.71
SF3B1-212ENST00000496458 AEBP1Q8IUX7 1158 aa10.6□□□□□ -0.71
SF3B1-212ENST00000496458 POP1Q99575 1024 aaKnown RBP10.6□□□□□ -0.71
SF3B1-212ENST00000496458 SPOCK3Q9BQ16 436 aa10.6□□□□□ -0.71
SF3B1-212ENST00000496458 RBCK1Q9BYM8 510 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms