RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 MYD88Q99836 296 aa13.74□□□□□ -0.21
COL6A3-214ENST00000493608 ABCC4O15439 1325 aa13.73□□□□□ -0.21
COL6A3-214ENST00000493608 HOXB1P14653 301 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-214ENST00000493608 IARSP41252 1262 aaKnown RBP13.73□□□□□ -0.21
COL6A3-214ENST00000493608 TWISTNBQ3B726 338 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-214ENST00000493608 RBM46Q8TBY0 533 aaKnown RBP13.73□□□□□ -0.21
COL6A3-214ENST00000493608 DDX60Q8IY21 1712 aaKnown RBP13.73□□□□□ -0.21
COL6A3-214ENST00000493608 IL16Q14005 1332 aa13.72□□□□□ -0.21
COL6A3-214ENST00000493608 RNF123Q5XPI4 1314 aa13.72□□□□□ -0.21
COL6A3-214ENST00000493608 DDX46Q7L014 1031 aaKnown RBP13.72□□□□□ -0.21
COL6A3-214ENST00000493608 G2E3Q7L622 706 aa13.72□□□□□ -0.21
COL6A3-214ENST00000493608 ZNF541Q9H0D2 1346 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 FANCIQ9NVI1 1328 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 TRIM28Q13263 835 aaKnown RBP13.71□□□□□ -0.21
COL6A3-214ENST00000493608 CC2D2BQ6DHV5 1058 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 WDR63Q8IWG1 891 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 PSMD1Q99460 953 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 STK31Q9BXU1 1019 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 MAP3K2Q9Y2U5 619 aa13.71□□□□□ -0.21
COL6A3-214ENST00000493608 SNED1Q8TER0 1413 aa13.71□□□□□ -0.22
COL6A3-214ENST00000493608 WDR90Q96KV7 1748 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 CEP350Q5VT06 3117 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 PI4KAP2A4QPH2 592 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 IRS4O14654 1257 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-214ENST00000493608 PPP1R37O75864 691 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 BBOX1O75936 387 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 DDX58O95786 925 aaKnown RBP13.7□□□□□ -0.22
COL6A3-214ENST00000493608 HTRA3P83110 453 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 EXOSC9Q06265 439 aaKnown RBP13.7□□□□□ -0.22
COL6A3-214ENST00000493608 PI4KAP1Q8N8J0 262 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 METTL22Q9BUU2 404 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-214ENST00000493608 CHMP4AQ9BY43 222 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 TMX4Q9H1E5 349 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-214ENST00000493608 ATP6V0A2Q9Y487 856 aa13.7□□□□□ -0.22
COL6A3-214ENST00000493608 FZD9O00144 591 aa13.69□□□□□ -0.22
COL6A3-214ENST00000493608 GRAPQ13588 217 aa13.69□□□□□ -0.22
COL6A3-214ENST00000493608 KSR2Q6VAB6 950 aa13.69□□□□□ -0.22
COL6A3-214ENST00000493608 ZNF710Q8N1W2 664 aa13.69□□□□□ -0.22
COL6A3-214ENST00000493608 LARGE2Q8N3Y3 721 aa13.69□□□□□ -0.22
COL6A3-214ENST00000493608 GRAPLQ8TC17 118 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-214ENST00000493608 VAMP4O75379 141 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 APLP1P51693 650 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 FSTL1Q12841 308 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 SF3B3Q15393 1217 aaKnown RBP13.68□□□□□ -0.22
COL6A3-214ENST00000493608 AOC3Q16853 763 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 SP8Q8IXZ3 490 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 ZBTB38Q8NAP3 1195 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-214ENST00000493608 CCDC191Q8NCU4 936 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 SMC1BQ8NDV3 1235 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 JDP2Q8WYK2 163 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 CELF1Q92879 486 aaKnown RBP13.68□□□□□ -0.22
COL6A3-214ENST00000493608 CCDC85AQ96PX6 553 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-214ENST00000493608 HS3ST6Q96QI5 342 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 CWC25Q9NXE8 425 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-214ENST00000493608 COL4A5P29400 1685 aa13.68□□□□□ -0.22
COL6A3-214ENST00000493608 COL4A1P02462 1669 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 FAM205CA6NFA0 338 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 PPIP5K2O43314 1243 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 GRIPAP1Q4V328 841 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 DPP8Q6V1X1 898 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-214ENST00000493608 MPNDQ8N594 471 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 GJA3Q9Y6H8 435 aa13.67□□□□□ -0.22
COL6A3-214ENST00000493608 PCCAP05165 728 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-214ENST00000493608 IGKV5-2P06315 115 aa13.66□□□□□ -0.22
COL6A3-214ENST00000493608 CWF19L2Q2TBE0 894 aaKnown RBP13.66□□□□□ -0.22
COL6A3-214ENST00000493608 SEC31BQ9NQW1 1179 aa13.66□□□□□ -0.22
COL6A3-214ENST00000493608 CACNA1FO60840 1977 aa13.65□□□□□ -0.22
COL6A3-214ENST00000493608 EIF6P56537 245 aaKnown RBP13.65□□□□□ -0.22
COL6A3-214ENST00000493608 FLIIQ13045 1269 aa13.65□□□□□ -0.22
COL6A3-214ENST00000493608 EAPPQ56P03 285 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-214ENST00000493608 NIM1KQ8IY84 436 aa13.65□□□□□ -0.22
COL6A3-214ENST00000493608 TAF1DQ9H5J8 278 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-214ENST00000493608 ZSWIM6Q9HCJ5 1215 aa13.65□□□□□ -0.22
COL6A3-214ENST00000493608 SCN4AP35499 1836 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 IQCA1LA6NCM1 817 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 RIMBP2O15034 1052 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 PDE8AO60658 829 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 RPS8P62241 208 aaKnown RBP13.64□□□□□ -0.23
COL6A3-214ENST00000493608 NEXNQ0ZGT2 675 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 FKBP5Q13451 457 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-214ENST00000493608 GPR153Q6NV75 609 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 SUPT20HQ8NEM7 779 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 RTFDC1Q9BY42 306 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-214ENST00000493608 MYH16Q9H6N6 1097 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 HACL1Q9UJ83 578 aa13.64□□□□□ -0.23
COL6A3-214ENST00000493608 NSFL1CQ9UNZ2 370 aaKnown RBP13.64□□□□□ -0.23
COL6A3-214ENST00000493608 C2orf72A6NCS6 295 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 NEURL1BA8MQ27 555 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 EPHX2P34913 555 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 GPSM2P81274 684 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 GPC2Q8N158 579 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 DNAJC5GQ8N7S2 189 aa13.63□□□□□ -0.23
COL6A3-214ENST00000493608 F6X3S4 739 aa13.62□□□□□ -0.23
COL6A3-214ENST00000493608 C6orf229H3BNL8 230 aa13.62□□□□□ -0.23
COL6A3-214ENST00000493608 CCDC152Q4G0S7 254 aa13.62□□□□□ -0.23
COL6A3-214ENST00000493608 TMC4Q7Z404 712 aa13.62□□□□□ -0.23
COL6A3-214ENST00000493608 DNAAF4Q8WXU2 420 aa13.62□□□□□ -0.23
COL6A3-214ENST00000493608 GPR101Q96P66 508 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-214ENST00000493608 MYH3P11055 1940 aa13.61□□□□□ -0.23
COL6A3-214ENST00000493608 HSP90B1P14625 803 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms