RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NEMFO60524 1076 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 CYP21A2P08686 494 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 RBM6P78332 1123 aaKnown RBP14.35□□□□□ -0.11
COL3A1-206ENST00000487010 NEXNQ0ZGT2 675 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 GCKRQ14397 625 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 STX1AQ16623 288 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 COPRSQ9NQ92 184 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 PFKFB2O60825 505 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 TNNI3KQ59H18 835 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 NAA16Q6N069 864 aaPredicted RBP14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CCDC129Q6ZRS4 1044 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CCAR1Q8IX12 1150 aaKnown RBP14.34□□□□□ -0.11
COL3A1-206ENST00000487010 OGFRQ9NZT2 677 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 FPGT-TNNI3KV9GXZ4 949 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CEBPZQ03701 1054 aaKnown RBP14.34□□□□□ -0.11
COL3A1-206ENST00000487010 MCMDC2Q4G0Z9 681 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CEP135Q66GS9 1140 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CGNQ9P2M7 1197 aaKnown RBP14.34□□□□□ -0.11
COL3A1-206ENST00000487010 CTNNA3Q9UI47 895 aa14.34□□□□□ -0.11
COL3A1-206ENST00000487010 LAMA4Q16363 1823 aa14.33□□□□□ -0.12
COL3A1-206ENST00000487010 RFX5P48382 616 aaPredicted RBP14.33□□□□□ -0.12
COL3A1-206ENST00000487010 TFCP2Q12800 502 aa14.33□□□□□ -0.12
COL3A1-206ENST00000487010 NSUN7Q8NE18 718 aaKnown RBP14.33□□□□□ -0.12
COL3A1-206ENST00000487010 SEC62Q99442 399 aaKnown RBP14.33□□□□□ -0.12
COL3A1-206ENST00000487010 MYD88Q99836 296 aa14.33□□□□□ -0.12
COL3A1-206ENST00000487010 METTL22Q9BUU2 404 aaPredicted RBP14.33□□□□□ -0.12
COL3A1-206ENST00000487010 GOLPH3LQ9H4A5 285 aa14.33□□□□□ -0.12
COL3A1-206ENST00000487010 ADAMTS7Q9UKP4 1686 aa14.33□□□□□ -0.12
COL3A1-206ENST00000487010 KIF20AO95235 890 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 CHGBP05060 677 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 PTPN12Q05209 780 aaKnown RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 SNW1Q13573 536 aaKnown RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 ESCO1Q5FWF5 840 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 ARHGEF25Q86VW2 580 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 HAUS7Q99871 368 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 LRRC2Q9BYS8 371 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 NDUFB9Q9Y6M9 179 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 CTDNEP1O95476 244 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 HMGB1P09429 215 aaKnown RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 FGD1P98174 961 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 NAA30Q147X3 362 aaPredicted RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 ARID5BQ14865 1188 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 ATL3Q6DD88 541 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 STOX1Q6ZVD7 989 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 DHX40Q8IX18 779 aaKnown RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 ANKRD24Q8TF21 1146 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 XAGE3Q8WTP9 111 aa14.32□□□□□ -0.12
COL3A1-206ENST00000487010 RBM33Q96EV2 1170 aaKnown RBP14.32□□□□□ -0.12
COL3A1-206ENST00000487010 C5P01031 1676 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 MYL6BP14649 208 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 CCDC73Q6ZRK6 1079 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 DHX32Q7L7V1 743 aaKnown RBP14.31□□□□□ -0.12
COL3A1-206ENST00000487010 ENGASEQ8NFI3 743 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 DNAJC2Q99543 621 aaKnown RBP14.31□□□□□ -0.12
COL3A1-206ENST00000487010 FTOQ9C0B1 505 aaKnown RBP eCLIP14.31□□□□□ -0.12
COL3A1-206ENST00000487010 ANO10Q9NW15 660 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 LMTK3Q96Q04 1460 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 CAMTA1Q9Y6Y1 1673 aa14.31□□□□□ -0.12
COL3A1-206ENST00000487010 PTPDC1A2A3K4 754 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 USP27XA6NNY8 438 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 BECN2A8MW95 431 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 GCP02774 474 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 SKILP12757 684 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 NYAP1Q6ZVC0 841 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 COPS6Q7L5N1 327 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 ZNF592Q92610 1267 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 ZNF396Q96N95 335 aaPredicted RBP14.3□□□□□ -0.12
COL3A1-206ENST00000487010 USP28Q96RU2 1077 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 DBNDD2Q9BQY9 259 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 KINO60870 393 aaKnown RBP14.3□□□□□ -0.12
COL3A1-206ENST00000487010 FAM160A1Q05DH4 1040 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 PTPN14Q15678 1187 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 ZNF790Q6PG37 636 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 DDX41Q9UJV9 622 aaKnown RBP14.3□□□□□ -0.12
COL3A1-206ENST00000487010 SH3TC1Q8TE82 1336 aa14.3□□□□□ -0.12
COL3A1-206ENST00000487010 CCDC69A6NI79 296 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 FOSBP53539 338 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 CCZ1BP86790 482 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 CCZ1P86791 482 aaPredicted RBP14.29□□□□□ -0.12
COL3A1-206ENST00000487010 EXOSC10Q01780 885 aaKnown RBP14.29□□□□□ -0.12
COL3A1-206ENST00000487010 APOBRQ0VD83 1088 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 SLC39A6Q13433 755 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 RABL6Q3YEC7 729 aaPredicted RBP14.29□□□□□ -0.12
COL3A1-206ENST00000487010 AGXT2Q9BYV1 514 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 USP16Q9Y5T5 823 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 ANKRD13DQ6ZTN6 518 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 DDX46Q7L014 1031 aaKnown RBP14.29□□□□□ -0.12
COL3A1-206ENST00000487010 KBTBD3Q8NAB2 608 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 KCND1Q9NSA2 647 aa14.29□□□□□ -0.12
COL3A1-206ENST00000487010 SLIT3O75094 1523 aa14.28□□□□□ -0.12
COL3A1-206ENST00000487010 FILIP1Q7Z7B0 1213 aa14.28□□□□□ -0.12
COL3A1-206ENST00000487010 FSIP1Q8NA03 581 aa14.28□□□□□ -0.12
COL3A1-206ENST00000487010 MORC2Q9Y6X9 1032 aaPredicted RBP14.28□□□□□ -0.12
COL3A1-206ENST00000487010 SALL1Q9NSC2 1324 aa14.28□□□□□ -0.12
COL3A1-206ENST00000487010 AFDNP55196 1824 aaKnown RBP14.28□□□□□ -0.12
COL3A1-206ENST00000487010 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.27□□□□□ -0.12
COL3A1-206ENST00000487010 ME1P48163 572 aa14.27□□□□□ -0.12
COL3A1-206ENST00000487010 CCT2P78371 535 aaKnown RBP14.27□□□□□ -0.12
COL3A1-206ENST00000487010 CEP57L1Q8IYX8 460 aa14.27□□□□□ -0.12
COL3A1-206ENST00000487010 CCAR2Q8N163 923 aaKnown RBP14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms