RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 SMG9Q9H0W8 520 aaKnown RBP7.03□□□□□ -1.28
VPS50-217ENST00000485140 MMP20O60882 483 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 SMNDC1O75940 238 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS50-217ENST00000485140 USP5P45974 858 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 EHHADHQ08426 723 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 ILDR2Q71H61 639 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 SLC51AQ86UW1 340 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 DMRTC2Q8IXT2 367 aaPredicted RBP7.02□□□□□ -1.29
VPS50-217ENST00000485140 CCDC82Q8N4S0 544 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 SAP130Q9H0E3 1048 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 ABI2Q9NYB9 513 aaPredicted RBP7.02□□□□□ -1.29
VPS50-217ENST00000485140 USP21Q9UK80 565 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 USTQ9Y2C2 406 aa7.02□□□□□ -1.29
VPS50-217ENST00000485140 FURINP09958 794 aa7.01□□□□□ -1.29
VPS50-217ENST00000485140 SF3B2Q13435 895 aaKnown RBP7.01□□□□□ -1.29
VPS50-217ENST00000485140 MBTPS1Q14703 1052 aa7.01□□□□□ -1.29
VPS50-217ENST00000485140 XKR5Q6UX68 686 aa7.01□□□□□ -1.29
VPS50-217ENST00000485140 KRTAP1-3Q8IUG1 177 aa7.01□□□□□ -1.29
VPS50-217ENST00000485140 MRPL18Q9H0U6 180 aaKnown RBP7.01□□□□□ -1.29
VPS50-217ENST00000485140 ZBTB42B2RXF5 422 aa7□□□□□ -1.29
VPS50-217ENST00000485140 FAM13AO94988 1023 aa7□□□□□ -1.29
VPS50-217ENST00000485140 SCNN1AP37088 669 aa7□□□□□ -1.29
VPS50-217ENST00000485140 NAA30Q147X3 362 aaPredicted RBP7□□□□□ -1.29
VPS50-217ENST00000485140 GRIK4Q16099 956 aa7□□□□□ -1.29
VPS50-217ENST00000485140 GRIK5Q16478 980 aa7□□□□□ -1.29
VPS50-217ENST00000485140 NOM1Q5C9Z4 860 aaKnown RBP7□□□□□ -1.29
VPS50-217ENST00000485140 FAM117BQ6P1L5 589 aa7□□□□□ -1.29
VPS50-217ENST00000485140 FAM229AH3BQW9 127 aa6.99□□□□□ -1.29
VPS50-217ENST00000485140 SELPP16109 830 aa6.99□□□□□ -1.29
VPS50-217ENST00000485140 DOC2BQ14184 412 aa6.99□□□□□ -1.29
VPS50-217ENST00000485140 KIF4AO95239 1232 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 SSFA2P28290 1259 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 MZF1P28698 734 aaPredicted RBP6.98□□□□□ -1.29
VPS50-217ENST00000485140 MLLT1Q03111 559 aaPredicted RBP6.98□□□□□ -1.29
VPS50-217ENST00000485140 TRIP4Q15650 581 aaPredicted RBP6.98□□□□□ -1.29
VPS50-217ENST00000485140 ZNF438Q7Z4V0 828 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 TMEM130Q8N3G9 435 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 GPR152Q8TDT2 470 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 WNT8BQ93098 351 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 SEMA6BQ9H3T3 888 aa6.98□□□□□ -1.29
VPS50-217ENST00000485140 ARID3CA6NKF2 412 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 PTPRAP18433 802 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 RSPO4Q2I0M5 234 aaPredicted RBP6.97□□□□□ -1.29
VPS50-217ENST00000485140 IL22RA1Q8N6P7 574 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 NSUN5Q96P11 429 aaKnown RBP6.97□□□□□ -1.29
VPS50-217ENST00000485140 ELP3Q9H9T3 547 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 TPSG1Q9NRR2 321 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 PPME1Q9Y570 386 aa6.97□□□□□ -1.29
VPS50-217ENST00000485140 DLL1O00548 723 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 NPR3P17342 541 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 CABP4P57796 275 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 NKAPLQ5M9Q1 402 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 NCAPG2Q86XI2 1143 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 KLHL23Q8NBE8 558 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 USP20Q9Y2K6 914 aa6.96□□□□□ -1.3
VPS50-217ENST00000485140 TMEM88BA6NKF7 163 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 DYRK3O43781 588 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 NEFLP07196 543 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 GDF6Q6KF10 455 aaPredicted RBP6.95□□□□□ -1.3
VPS50-217ENST00000485140 HFE2Q6ZVN8 426 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 Q8N3U1 123 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 NUDT16Q96DE0 195 aaKnown RBP6.95□□□□□ -1.3
VPS50-217ENST00000485140 EGFL7Q9UHF1 273 aa6.95□□□□□ -1.3
VPS50-217ENST00000485140 CDC27P30260 824 aa6.94□□□□□ -1.3
VPS50-217ENST00000485140 GTF3C2Q8WUA4 911 aaPredicted RBP6.94□□□□□ -1.3
VPS50-217ENST00000485140 WFDC12Q8WWY7 111 aa6.94□□□□□ -1.3
VPS50-217ENST00000485140 CEP41Q9BYV8 373 aa6.94□□□□□ -1.3
VPS50-217ENST00000485140 AKTIPQ9H8T0 292 aa6.94□□□□□ -1.3
VPS50-217ENST00000485140 J3QW42 95 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 GSC2O15499 205 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 EDN3P14138 238 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 CES1P23141 567 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 EIF1AXP47813 144 aaKnown RBP6.93□□□□□ -1.3
VPS50-217ENST00000485140 FKBP4Q02790 459 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS50-217ENST00000485140 AAMPQ13685 434 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 EDEM1Q92611 657 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 TP53INP1Q96A56 240 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 PBX4Q9BYU1 374 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 SEPT3Q9UH03 358 aa6.93□□□□□ -1.3
VPS50-217ENST00000485140 PDGFAP04085 211 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 ARL4DP49703 201 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 DNM1Q05193 864 aaKnown RBP6.92□□□□□ -1.3
VPS50-217ENST00000485140 UVSSAQ2YD98 709 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 CEP135Q66GS9 1140 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 CAPN12Q6ZSI9 719 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 SNX29Q8TEQ0 813 aa6.92□□□□□ -1.3
VPS50-217ENST00000485140 SSBP4Q9BWG4 385 aaPredicted RBP6.92□□□□□ -1.3
VPS50-217ENST00000485140 PIP4K2BP78356 416 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 ZMYM1Q5SVZ6 1142 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 SHISA2Q6UWI4 295 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 CEP120Q8N960 986 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 ADAM19Q9H013 955 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 OSGEPQ9NPF4 335 aa6.91□□□□□ -1.3
VPS50-217ENST00000485140 DEAF1O75398 565 aaPredicted RBP6.9□□□□□ -1.3
VPS50-217ENST00000485140 MPSTP25325 297 aa6.9□□□□□ -1.3
VPS50-217ENST00000485140 SETDB1Q15047 1291 aa6.9□□□□□ -1.3
VPS50-217ENST00000485140 C8orf34Q49A92 452 aa6.9□□□□□ -1.3
VPS50-217ENST00000485140 Q6ZS46 218 aa6.9□□□□□ -1.3
VPS50-217ENST00000485140 SLAIN2Q9P270 581 aa6.9□□□□□ -1.3
VPS50-217ENST00000485140 TRIM33Q9UPN9 1127 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms