RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 TAF1LQ8IZX4 1826 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 ZKSCAN1P17029 563 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-222ENST00000474655 LDHAL6AQ6ZMR3 332 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 CERKQ8TCT0 537 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 XAGE2Q96GT9 111 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 HMG20BQ9P0W2 317 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 NDUFB9Q9Y6M9 179 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 RTL9Q8NET4 1388 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 CASZ1Q86V15 1759 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 A0A0G2JS52 829 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 IFIT1P09914 478 aaKnown RBP14.69□□□□□ -0.06
SYNE1-222ENST00000474655 SSFA2P28290 1259 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 MCMDC2Q4G0Z9 681 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 CCDC158Q5M9N0 1113 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 VPS53Q5VIR6 699 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 DDX46Q7L014 1031 aaKnown RBP14.69□□□□□ -0.06
SYNE1-222ENST00000474655 LINC00116Q8NCU8 138 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 ZNF512BQ96KM6 892 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-222ENST00000474655 UTP14AQ9BVJ6 771 aaKnown RBP14.69□□□□□ -0.06
SYNE1-222ENST00000474655 HELLSQ9NRZ9 838 aa14.69□□□□□ -0.06
SYNE1-222ENST00000474655 SLC27A2O14975 620 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 ONECUT3O60422 494 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 NTSR2O95665 410 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 HSP90B1P14625 803 aaKnown RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 CASTP20810 708 aaKnown RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 PTMSP20962 102 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 ADCK5Q3MIX3 580 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 RC3H1Q5TC82 1133 aaKnown RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 RNF20Q5VTR2 975 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 CCDC85AQ96PX6 553 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 GOLIM4O00461 696 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 AK2P54819 239 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 ZMYM1Q5SVZ6 1142 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 RUFY3Q7L099 469 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 ALDH8A1Q9H2A2 487 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-222ENST00000474655 LIMCH1Q9UPQ0 1083 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 ZNF652Q9Y2D9 606 aa14.68□□□□□ -0.06
SYNE1-222ENST00000474655 PDE8BO95263 885 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 PSMA5P28066 241 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 ADORA1P30542 326 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 METTL24Q5JXM2 366 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 JAKMIP1Q96N16 626 aaKnown RBP14.67□□□□□ -0.06
SYNE1-222ENST00000474655 ZDHHC9Q9Y397 364 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 CYP46A1Q9Y6A2 500 aa14.67□□□□□ -0.06
SYNE1-222ENST00000474655 KCNJ4P48050 445 aa14.66□□□□□ -0.06
SYNE1-222ENST00000474655 PKP1Q13835 747 aa14.66□□□□□ -0.06
SYNE1-222ENST00000474655 ATP2B3Q16720 1220 aa14.66□□□□□ -0.06
SYNE1-222ENST00000474655 GJD4Q96KN9 370 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-222ENST00000474655 CNNM1Q9NRU3 951 aa14.66□□□□□ -0.06
SYNE1-222ENST00000474655 NIP7Q9Y221 180 aaKnown RBP eCLIP14.66□□□□□ -0.06
SYNE1-222ENST00000474655 MROH5Q6ZUA9 1318 aa14.66□□□□□ -0.06
SYNE1-222ENST00000474655 ATRNO75882 1429 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 LAMA4Q16363 1823 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 COL24A1Q17RW2 1714 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 TTC39AQ5SRH9 613 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 SEC62Q99442 399 aaKnown RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 U3KPZ7 1027 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 RNF113AO15541 343 aaKnown RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 TRAK2O60296 914 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 BAG4O95429 457 aaKnown RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 CHGBP05060 677 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 ZFYP08048 801 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 FGFR2P21802 821 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 LRRFIP1Q32MZ4 808 aaKnown RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 PTF1AQ7RTS3 328 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 ZSCAN31Q96LW9 406 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-222ENST00000474655 DSCC1Q9BVC3 393 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 PDRG1Q9NUG6 133 aa14.65□□□□□ -0.06
SYNE1-222ENST00000474655 HCLS1P14317 486 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-222ENST00000474655 KRT32Q14532 448 aa14.64□□□□□ -0.07
SYNE1-222ENST00000474655 GORABQ5T7V8 394 aa14.64□□□□□ -0.07
SYNE1-222ENST00000474655 MYO5AQ9Y4I1 1855 aaKnown RBP14.64□□□□□ -0.07
SYNE1-222ENST00000474655 A0A1B0GUL6 1792 aa14.64□□□□□ -0.07
SYNE1-222ENST00000474655 RPS6KA4O75676 772 aa14.63□□□□□ -0.07
SYNE1-222ENST00000474655 BRD1O95696 1058 aa14.63□□□□□ -0.07
SYNE1-222ENST00000474655 CPA1P15085 419 aa14.63□□□□□ -0.07
SYNE1-222ENST00000474655 SKOR2Q2VWA4 1001 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-222ENST00000474655 CCDC152Q4G0S7 254 aa14.63□□□□□ -0.07
SYNE1-222ENST00000474655 SH2B1Q9NRF2 756 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-222ENST00000474655 DOCK2Q92608 1830 aa14.63□□□□□ -0.07
SYNE1-222ENST00000474655 ARID4AP29374 1257 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-222ENST00000474655 HSPA1LP34931 641 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 SCARF1Q14162 830 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 PUM3Q15397 648 aaKnown RBP14.62□□□□□ -0.07
SYNE1-222ENST00000474655 CCDC129Q6ZRS4 1044 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 NOL8Q76FK4 1167 aaKnown RBP14.62□□□□□ -0.07
SYNE1-222ENST00000474655 LPIN2Q92539 896 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 AFF2P51816 1311 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 GOLGA6L22H0YM25 854 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 RPS6KB1P23443 525 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 FKBP4Q02790 459 aaKnown RBP eCLIP14.62□□□□□ -0.07
SYNE1-222ENST00000474655 NARFQ9UHQ1 456 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-222ENST00000474655 TAF6LQ9Y6J9 622 aa14.62□□□□□ -0.07
SYNE1-222ENST00000474655 MAST3O60307 1309 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 C4AP0C0L4 1744 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 C4BP0C0L5 1744 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 MCAMP43121 646 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 ZAP70P43403 619 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 ANKRD1Q15327 319 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms