RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 VGLL2Q8N8G2 317 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 ZNF512BQ96KM6 892 aaPredicted RBP11.77□□□□□ -0.53
USP39-214ENST00000474572 DNAJC2Q99543 621 aaKnown RBP11.77□□□□□ -0.53
USP39-214ENST00000474572 SH2B1Q9NRF2 756 aaPredicted RBP11.77□□□□□ -0.53
USP39-214ENST00000474572 PDRG1Q9NUG6 133 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 LMBRD1Q9NUN5 540 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 CYP46A1Q9Y6A2 500 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 U3KPZ7 1027 aaPredicted RBP11.77□□□□□ -0.53
USP39-214ENST00000474572 KAT6BQ8WYB5 2073 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 IRS4O14654 1257 aaPredicted RBP11.76□□□□□ -0.53
USP39-214ENST00000474572 IFIT1P09914 478 aaKnown RBP11.76□□□□□ -0.53
USP39-214ENST00000474572 ITGA6P23229 1130 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 GPTP24298 496 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 ST3GAL1Q11201 340 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 KRT32Q14532 448 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 DDX46Q7L014 1031 aaKnown RBP11.76□□□□□ -0.53
USP39-214ENST00000474572 FNBP4Q8N3X1 1017 aaPredicted RBP11.76□□□□□ -0.53
USP39-214ENST00000474572 NEUROD6Q96NK8 337 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 DSCC1Q9BVC3 393 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 GREM2Q9H772 168 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.76□□□□□ -0.53
USP39-214ENST00000474572 ATRNO75882 1429 aa11.76□□□□□ -0.53
USP39-214ENST00000474572 SBF2Q86WG5 1849 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 TAF1LQ8IZX4 1826 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 ANKRD18BA2A2Z9 1011 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 NUTM2BA6NNL0 878 aaPredicted RBP11.75□□□□□ -0.53
USP39-214ENST00000474572 NUTM2EB1AL46 878 aaPredicted RBP11.75□□□□□ -0.53
USP39-214ENST00000474572 LARGE1O95461 756 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 CPA1P15085 419 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 RPS6KB1P23443 525 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 ATP6V1AP38606 617 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 KCNJ4P48050 445 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 PARP10Q53GL7 1025 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
USP39-214ENST00000474572 SYNE4Q8N205 404 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 ACSBG1Q96GR2 724 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 XAGE2Q96GT9 111 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 TRMT112Q9UI30 125 aaKnown RBP11.75□□□□□ -0.53
USP39-214ENST00000474572 TBC1D2BQ9UPU7 963 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 NDUFB9Q9Y6M9 179 aa11.75□□□□□ -0.53
USP39-214ENST00000474572 GOLIM4O00461 696 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 CHGBP05060 677 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 ADORA1P30542 326 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 ANKRD1Q15327 319 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 TAF7LQ5H9L4 462 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 CCDC158Q5M9N0 1113 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 BLOC1S2Q6QNY1 142 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 NOL8Q76FK4 1167 aaKnown RBP11.74□□□□□ -0.53
USP39-214ENST00000474572 SEC62Q99442 399 aaKnown RBP11.74□□□□□ -0.53
USP39-214ENST00000474572 TAF6LQ9Y6J9 622 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 MAST3O60307 1309 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 SPATA31A6Q5VVP1 1343 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 CNTNAP4Q9C0A0 1308 aa11.74□□□□□ -0.53
USP39-214ENST00000474572 WDR33Q9C0J8 1336 aaKnown RBP11.74□□□□□ -0.53
USP39-214ENST00000474572 RNF113AO15541 343 aaKnown RBP11.73□□□□□ -0.53
USP39-214ENST00000474572 NTSR2O95665 410 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 ZFYP08048 801 aaPredicted RBP11.73□□□□□ -0.53
USP39-214ENST00000474572 FGFR2P21802 821 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 PIP4K2BP78356 416 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 TOB2Q14106 344 aaPredicted RBP11.73□□□□□ -0.53
USP39-214ENST00000474572 ATP2B3Q16720 1220 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 LRRFIP1Q32MZ4 808 aaKnown RBP11.73□□□□□ -0.53
USP39-214ENST00000474572 TTC39AQ5SRH9 613 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 SUSD4Q5VX71 490 aa11.73□□□□□ -0.53
USP39-214ENST00000474572 MYO5AQ9Y4I1 1855 aaKnown RBP11.73□□□□□ -0.53
USP39-214ENST00000474572 GOLGA6L3A6NEY3 463 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 PDE8BO95263 885 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 CYP21A2P08686 494 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 PDIA4P13667 645 aaKnown RBP11.72□□□□□ -0.53
USP39-214ENST00000474572 ARID4AP29374 1257 aaPredicted RBP11.72□□□□□ -0.53
USP39-214ENST00000474572 COL9A3Q14050 684 aaPredicted RBP11.72□□□□□ -0.53
USP39-214ENST00000474572 ME3Q16798 604 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 METTL24Q5JXM2 366 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 LDHAL6AQ6ZMR3 332 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 CCDC129Q6ZRS4 1044 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 TMEM87AQ8NBN3 555 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 TPCN1Q9ULQ1 816 aa11.72□□□□□ -0.53
USP39-214ENST00000474572 MROH5Q6ZUA9 1318 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 ZNF445P59923 1031 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 SCARF1Q14162 830 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 CLEC4GQ6UXB4 293 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 CCDC85AQ96PX6 553 aaPredicted RBP11.71□□□□□ -0.53
USP39-214ENST00000474572 NEK1Q96PY6 1258 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 UTP14AQ9BVJ6 771 aaKnown RBP11.71□□□□□ -0.53
USP39-214ENST00000474572 AGXT2Q9BYV1 514 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 SMC3Q9UQE7 1217 aa11.71□□□□□ -0.53
USP39-214ENST00000474572 CCDC9Q9Y3X0 531 aaKnown RBP11.71□□□□□ -0.53
USP39-214ENST00000474572 DDX49Q9Y6V7 483 aaKnown RBP11.71□□□□□ -0.53
USP39-214ENST00000474572 C4AP0C0L4 1744 aa11.71□□□□□ -0.54
USP39-214ENST00000474572 C4BP0C0L5 1744 aa11.71□□□□□ -0.54
USP39-214ENST00000474572 COL4A1P02462 1669 aa11.71□□□□□ -0.54
USP39-214ENST00000474572 UBAP1LF5GYI3 381 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 M0R2C6 588 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 KCNQ2O43526 872 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 ZSCAN22P10073 491 aaPredicted RBP11.7□□□□□ -0.54
USP39-214ENST00000474572 HSPD1P10809 573 aaKnown RBP11.7□□□□□ -0.54
USP39-214ENST00000474572 HSP90B1P14625 803 aaKnown RBP11.7□□□□□ -0.54
USP39-214ENST00000474572 SYT1P21579 422 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 ZAP70P43403 619 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms