RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 DNAJC2Q99543 621 aaKnown RBP20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 ZSWIM6Q9HCJ5 1215 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 GOLGA6L22H0YM25 854 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 IRS4O14654 1257 aaPredicted RBP20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 PDE8AO60658 829 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 RPS6KA4O75676 772 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 KCNQ4P56696 695 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 RNF20Q5VTR2 975 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 CREB3L3Q68CJ9 461 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 ZNF609O15014 1411 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 C4BP0C0L5 1744 aa20.33■□□□□ 0.85
SMARCD3-206ENST00000470588 GNPATO15228 680 aa20.33■□□□□ 0.84
SMARCD3-206ENST00000470588 RXRBP28702 533 aa20.33■□□□□ 0.84
SMARCD3-206ENST00000470588 CTSWP56202 376 aa20.33■□□□□ 0.84
SMARCD3-206ENST00000470588 LIMCH1Q9UPQ0 1083 aa20.33■□□□□ 0.84
SMARCD3-206ENST00000470588 RTCBQ9Y3I0 505 aaKnown RBP20.33■□□□□ 0.84
SMARCD3-206ENST00000470588 ANKRD18BA2A2Z9 1011 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 BAG4O95429 457 aaKnown RBP20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 PSMA5P28066 241 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 VPS53Q5VIR6 699 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 SYNE4Q8N205 404 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 FBXO41Q8TF61 875 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 UTP14AQ9BVJ6 771 aaKnown RBP20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 CYP46A1Q9Y6A2 500 aa20.32■□□□□ 0.84
SMARCD3-206ENST00000470588 UBN2Q6ZU65 1347 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 SLC27A2O14975 620 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 TAF5LO75529 589 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 CASTP20810 708 aaKnown RBP20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 TSGA10IPQ3SY00 556 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 MCMDC2Q4G0Z9 681 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 JAKMIP1Q96N16 626 aaKnown RBP20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 PAG1Q9NWQ8 432 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 NIP7Q9Y221 180 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 RIPOR2Q9Y4F9 1068 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 SH3TC1Q8TE82 1336 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 IFIT1P09914 478 aaKnown RBP20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 SLC27A3Q5K4L6 730 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 CCDC158Q5M9N0 1113 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 USPL1Q5W0Q7 1092 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 PDRG1Q9NUG6 133 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 HMG20BQ9P0W2 317 aa20.31■□□□□ 0.84
SMARCD3-206ENST00000470588 TRIM37O94972 964 aa20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 ITGA6P23229 1130 aa20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 AK2P54819 239 aa20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 RUFY3Q7L099 469 aa20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 ZSCAN31Q96LW9 406 aaPredicted RBP20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 HELLSQ9NRZ9 838 aa20.3■□□□□ 0.84
SMARCD3-206ENST00000470588 LAMB2P55268 1798 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 ZPR1O75312 459 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 NOL8Q76FK4 1167 aaKnown RBP20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 DDX46Q7L014 1031 aaKnown RBP20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 ZNF589Q86UQ0 364 aaPredicted RBP20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 CCDC85AQ96PX6 553 aaPredicted RBP20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 NARFQ9UHQ1 456 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 GOLIM4O00461 696 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 ADCK5Q3MIX3 580 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 GORABQ5T7V8 394 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 LDHAL6AQ6ZMR3 332 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 XAGE2Q96GT9 111 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 GREM2Q9H772 168 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 ZDHHC9Q9Y397 364 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 NDUFB9Q9Y6M9 179 aa20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 U3KPZ7 1027 aaPredicted RBP20.29■□□□□ 0.84
SMARCD3-206ENST00000470588 LRRFIP1Q32MZ4 808 aaKnown RBP20.28■□□□□ 0.84
SMARCD3-206ENST00000470588 SUSD4Q5VX71 490 aa20.28■□□□□ 0.84
SMARCD3-206ENST00000470588 ALDH8A1Q9H2A2 487 aaPredicted RBP20.28■□□□□ 0.84
SMARCD3-206ENST00000470588 METTL24Q5JXM2 366 aa20.27■□□□□ 0.84
SMARCD3-206ENST00000470588 TTC39AQ5SRH9 613 aa20.27■□□□□ 0.84
SMARCD3-206ENST00000470588 PKP1Q13835 747 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 KRT32Q14532 448 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 SH2B1Q9NRF2 756 aaPredicted RBP20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 FAM177BA6PVY3 158 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 BRD1O95696 1058 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 ZMYM1Q5SVZ6 1142 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 CNNM1Q9NRU3 951 aa20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 RPAP1Q9BWH6 1393 aaPredicted RBP20.26■□□□□ 0.83
SMARCD3-206ENST00000470588 SPEF2Q9C093 1822 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 C4AP0C0L4 1744 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 RNF113AO15541 343 aaKnown RBP20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 ADRA2BP18089 450 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 ATP2B3Q16720 1220 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 TRAPPC3LQ5T215 181 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 ABCC12Q96J65 1359 aa20.25■□□□□ 0.83
SMARCD3-206ENST00000470588 DDX60Q8IY21 1712 aaKnown RBP20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 NTSR2O95665 410 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 CPA1P15085 419 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 ADORA1P30542 326 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 RFC4P35249 363 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 ANKRD1Q15327 319 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 BLOC1S2Q6QNY1 142 aa20.24■□□□□ 0.83
SMARCD3-206ENST00000470588 ZNF512BQ96KM6 892 aaPredicted RBP20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 NYXQ9GZU5 481 aa20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 ZFYP08048 801 aaPredicted RBP20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 MCTP1Q6DN14 999 aa20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 SEC62Q99442 399 aaKnown RBP20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 DSCC1Q9BVC3 393 aa20.23■□□□□ 0.83
SMARCD3-206ENST00000470588 RPS6KB1P23443 525 aa20.22■□□□□ 0.83
SMARCD3-206ENST00000470588 ARHGEF1Q92888 912 aaKnown RBP20.22■□□□□ 0.83
SMARCD3-206ENST00000470588 SETDB2Q96T68 719 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms