RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 USP47Q96K76 1375 aa5.87□□□□□ -1.47
SF3B1-207ENST00000468925 ANKRD30BQ9BXX2 1392 aa5.87□□□□□ -1.47
SF3B1-207ENST00000468925 EPRSP07814 1512 aaKnown RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 ARHGEF12Q9NZN5 1544 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 FGD5Q6ZNL6 1462 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 PHF20L1A8MW92 1017 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 CTIFO43310 598 aaKnown RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 KIF1CO43896 1103 aaKnown RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 NOM1Q5C9Z4 860 aaKnown RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 KRT222Q8N1A0 295 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 TNPO1Q92973 898 aaKnown RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 PRDM10Q9NQV6 1147 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 ENAMQ9NRM1 1142 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 MORC2Q9Y6X9 1032 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-207ENST00000468925 IVNS1ABPQ9Y6Y0 642 aa5.86□□□□□ -1.47
SF3B1-207ENST00000468925 SUPT6HQ7KZ85 1726 aaKnown RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 E9PCH4 1651 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 PLXNC1O60486 1568 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 KDM5CP41229 1560 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 RALGAPBQ86X10 1494 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 HTATSF1O43719 755 aaKnown RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 BCRP11274 1271 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 PLA2G4AP47712 749 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 FKBP5Q13451 457 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 CDCA8Q53HL2 280 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 TEX35Q5T0J7 233 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 LRSAM1Q6UWE0 723 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 GAS2L3Q86XJ1 694 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 SLC26A8Q96RN1 970 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 MYCBPQ99417 103 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 MPHOSPH9Q99550 1183 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 TACO1Q9BSH4 297 aaKnown RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 FHDC1Q9C0D6 1143 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-207ENST00000468925 PRM3Q9NNZ6 103 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 SERTAD1Q9UHV2 236 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 USTQ9Y2C2 406 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 PAXBP1Q9Y5B6 917 aa5.85□□□□□ -1.47
SF3B1-207ENST00000468925 SAMD9Q5K651 1589 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 REREQ9P2R6 1566 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 EHBP1L1Q8N3D4 1523 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 NKTRP30414 1462 aaKnown RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 SCAF11Q99590 1463 aaKnown RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 MBD5Q9P267 1494 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 CSB-PGBD3P0DP91 1061 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 MSX1P28360 303 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 XPCQ01831 940 aaPredicted RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 GPS2Q13227 327 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 NOLC1Q14978 699 aaKnown RBP eCLIP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 TERF2Q15554 542 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 ESCO1Q5FWF5 840 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 MUM1L1Q5H9M0 696 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 CYB5RLQ6IPT4 315 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 TRMT2AQ8IZ69 625 aaKnown RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 PGBD3Q8N328 593 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 ABHD17AQ96GS6 310 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 XAGE2Q96GT9 111 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 GMCL1Q96IK5 515 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 NCAPGQ9BPX3 1015 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 USP25Q9UHP3 1055 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 DDX41Q9UJV9 622 aaKnown RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 V9GYY5 206 aaPredicted RBP5.84□□□□□ -1.47
SF3B1-207ENST00000468925 PRDM2Q13029 1718 aa5.84□□□□□ -1.47
SF3B1-207ENST00000468925 A0A1B0GTH6 734 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 SOCS7O14512 581 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 REC8O95072 547 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 TUBB4AP04350 444 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 SLFN14P0C7P3 912 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 GDF10P55107 478 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 LMOD3Q0VAK6 560 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 TRDNQ13061 729 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 USP4Q13107 963 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 RABEP1Q15276 862 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 HSP90AB3PQ58FF7 597 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 DUSP27Q5VZP5 1158 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 PODNQ7Z5L7 613 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 TXLNBQ8N3L3 684 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 PHTF2Q8N3S3 785 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 AIDAQ96BJ3 306 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 OXCT2Q9BYC2 517 aaPredicted RBP5.83□□□□□ -1.48
SF3B1-207ENST00000468925 RASSF4Q9H2L5 321 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 RRAGCQ9HB90 399 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 GOLGA2P5Q9HBQ8 144 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 NSFL1CQ9UNZ2 370 aaKnown RBP5.83□□□□□ -1.48
SF3B1-207ENST00000468925 KNSTRNQ9Y448 316 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 HRH3Q9Y5N1 445 aa5.83□□□□□ -1.48
SF3B1-207ENST00000468925 PCF11O94913 1555 aaKnown RBP5.83□□□□□ -1.48
SF3B1-207ENST00000468925 ZNF521Q96K83 1311 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 LAMC3Q9Y6N6 1575 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 SHISA8B8ZZ34 492 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 PIK3CDO00329 1044 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 ATP8B1O43520 1251 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 CT47B1P0C2W7 299 aaPredicted RBP5.82□□□□□ -1.48
SF3B1-207ENST00000468925 GTF2A1P52655 376 aaPredicted RBP5.82□□□□□ -1.48
SF3B1-207ENST00000468925 SLFN5Q08AF3 891 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 ZSCAN23Q3MJ62 389 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 PLPP7Q8NBV4 271 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 SMC4Q9NTJ3 1288 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 RAI14Q9P0K7 980 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 WDR62O43379 1518 aa5.82□□□□□ -1.48
SF3B1-207ENST00000468925 SNAPC4Q5SXM2 1469 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms