RNA–Protein interactions for RNA: ENST00000466438.1

HMGXB4-206, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-206ENST00000466438 R3HDMLQ9H3Y0 253 aa19.55■□□□□ 0.72
HMGXB4-206ENST00000466438 MIS18AQ9NYP9 233 aa19.55■□□□□ 0.72
HMGXB4-206ENST00000466438 TRIM17Q9Y577 477 aa19.55■□□□□ 0.72
HMGXB4-206ENST00000466438 ZNF609O15014 1411 aa19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 KIAA0100Q14667 2235 aaKnown RBP19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 ZNF280AP59817 542 aaPredicted RBP19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 OTOP1Q7RTM1 612 aa19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 NSFL1CQ9UNZ2 370 aaKnown RBP19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 KDM3BQ7LBC6 1761 aa19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 TAF1P21675 1872 aa19.54■□□□□ 0.72
HMGXB4-206ENST00000466438 ERBB4Q15303 1308 aa19.53■□□□□ 0.72
HMGXB4-206ENST00000466438 C6orf229H3BNL8 230 aa19.53■□□□□ 0.72
HMGXB4-206ENST00000466438 EN2P19622 333 aaPredicted RBP19.53■□□□□ 0.72
HMGXB4-206ENST00000466438 DOK7Q18PE1 504 aa19.53■□□□□ 0.72
HMGXB4-206ENST00000466438 EYA3Q99504 573 aa19.53■□□□□ 0.72
HMGXB4-206ENST00000466438 TRIOBPQ9H2D6 2365 aa19.52■□□□□ 0.72
HMGXB4-206ENST00000466438 PER1O15534 1290 aaPredicted RBP19.52■□□□□ 0.72
HMGXB4-206ENST00000466438 MKRN3Q13064 507 aaKnown RBP19.52■□□□□ 0.72
HMGXB4-206ENST00000466438 PNISRQ8TF01 805 aaKnown RBP19.52■□□□□ 0.72
HMGXB4-206ENST00000466438 POLLQ9UGP5 575 aa19.52■□□□□ 0.72
HMGXB4-206ENST00000466438 SCN9AQ15858 1988 aa19.52■□□□□ 0.71
HMGXB4-206ENST00000466438 ALDH1A1P00352 501 aa19.51■□□□□ 0.71
HMGXB4-206ENST00000466438 EIF4A1P60842 406 aaKnown RBP19.51■□□□□ 0.71
HMGXB4-206ENST00000466438 SLC17A8Q8NDX2 589 aa19.51■□□□□ 0.71
HMGXB4-206ENST00000466438 NECTIN2Q92692 538 aa19.51■□□□□ 0.71
HMGXB4-206ENST00000466438 ARMC5Q96C12 935 aa19.51■□□□□ 0.71
HMGXB4-206ENST00000466438 TTLL12Q14166 644 aaPredicted RBP19.5■□□□□ 0.71
HMGXB4-206ENST00000466438 NLRP10Q86W26 655 aa19.5■□□□□ 0.71
HMGXB4-206ENST00000466438 AGBL3Q8NEM8 1001 aa19.5■□□□□ 0.71
HMGXB4-206ENST00000466438 SH3TC1Q8TE82 1336 aa19.5■□□□□ 0.71
HMGXB4-206ENST00000466438 GPSM2P81274 684 aa19.49■□□□□ 0.71
HMGXB4-206ENST00000466438 LRP10Q7Z4F1 713 aa19.49■□□□□ 0.71
HMGXB4-206ENST00000466438 TCIRG1Q13488 830 aa19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 HSP90AB3PQ58FF7 597 aa19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 OTUD5Q96G74 571 aa19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 MYOZ2Q9NPC6 264 aa19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 TRMT112Q9UI30 125 aaKnown RBP19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 PTPN22Q9Y2R2 807 aa19.48■□□□□ 0.71
HMGXB4-206ENST00000466438 NF2P35240 595 aa19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 RSBN1LQ6PCB5 846 aaPredicted RBP19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 TBC1D16Q8TBP0 767 aa19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 CELF1Q92879 486 aaKnown RBP19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 CFAP53Q96M91 514 aa19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 ZC3H12CQ9C0D7 883 aaKnown RBP19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 NUDCQ9Y266 331 aa19.47■□□□□ 0.71
HMGXB4-206ENST00000466438 CEP290O15078 2479 aa19.46■□□□□ 0.71
HMGXB4-206ENST00000466438 PRAMEF18Q5VWM3 479 aa19.46■□□□□ 0.71
HMGXB4-206ENST00000466438 ERO1AQ96HE7 468 aa19.46■□□□□ 0.71
HMGXB4-206ENST00000466438 THUMPD2Q9BTF0 503 aaKnown RBP19.46■□□□□ 0.71
HMGXB4-206ENST00000466438 SCAF8Q9UPN6 1271 aaKnown RBP19.46■□□□□ 0.71
HMGXB4-206ENST00000466438 H0YGN5 161 aa19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 USP17L8P0C7I0 530 aa19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 U2AF1L5P0DN76 240 aaPredicted RBP19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 U2AF1Q01081 240 aaKnown RBP eCLIP19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 SPRYD7Q5W111 196 aa19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 TMEM106CQ9BVX2 250 aa19.45■□□□□ 0.7
HMGXB4-206ENST00000466438 PSME4Q14997 1843 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 A0A0C4DFX4 3053 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 G3V3G9 751 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 INHBEP58166 350 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 PTPN12Q05209 780 aaKnown RBP19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 PDIA6Q15084 440 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 DCAF8Q5TAQ9 597 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 GMLQ99445 158 aa19.44■□□□□ 0.7
HMGXB4-206ENST00000466438 MANSC4A6NHS7 340 aaPredicted RBP19.43■□□□□ 0.7
HMGXB4-206ENST00000466438 ARMC9Q7Z3E5 817 aa19.43■□□□□ 0.7
HMGXB4-206ENST00000466438 IFNL1Q8IU54 200 aa19.43■□□□□ 0.7
HMGXB4-206ENST00000466438 CUL9Q8IWT3 2517 aa19.42■□□□□ 0.7
HMGXB4-206ENST00000466438 SF3B3Q15393 1217 aaKnown RBP19.42■□□□□ 0.7
HMGXB4-206ENST00000466438 CHRDL2Q6WN34 429 aa19.42■□□□□ 0.7
HMGXB4-206ENST00000466438 PODXL2Q9NZ53 605 aa19.42■□□□□ 0.7
HMGXB4-206ENST00000466438 COL4A1P02462 1669 aa19.42■□□□□ 0.7
HMGXB4-206ENST00000466438 CD99L2Q8TCZ2 262 aa19.41■□□□□ 0.7
HMGXB4-206ENST00000466438 ZNF333Q96JL9 665 aa19.41■□□□□ 0.7
HMGXB4-206ENST00000466438 EFCC1Q9HA90 598 aa19.41■□□□□ 0.7
HMGXB4-206ENST00000466438 RANBP2P49792 3224 aaKnown RBP19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 CNGB1Q14028 1251 aaPredicted RBP19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 PROSER3Q2NL68 480 aa19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 NBPF9Q3BBW0 867 aa19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 LDLRAD1Q5T700 205 aa19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 COL6A3P12111 3177 aa19.4■□□□□ 0.7
HMGXB4-206ENST00000466438 UFL1O94874 794 aa19.39■□□□□ 0.69
HMGXB4-206ENST00000466438 RBM27Q9P2N5 1060 aaKnown RBP19.39■□□□□ 0.69
HMGXB4-206ENST00000466438 LAMB1P07942 1786 aa19.39■□□□□ 0.69
HMGXB4-206ENST00000466438 IGF2BP3O00425 579 aaKnown RBP eCLIP19.38■□□□□ 0.69
HMGXB4-206ENST00000466438 ANXA1P04083 346 aa19.38■□□□□ 0.69
HMGXB4-206ENST00000466438 RPS8P62241 208 aaKnown RBP19.38■□□□□ 0.69
HMGXB4-206ENST00000466438 COPS6Q7L5N1 327 aa19.38■□□□□ 0.69
HMGXB4-206ENST00000466438 DLG5Q8TDM6 1919 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 USP17L3A6NCW0 530 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 USP17L4A6NCW7 530 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 ZBTB48P10074 688 aaPredicted RBP19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 EIF2S2P20042 333 aaKnown RBP19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 PRKG1Q13976 671 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 USP17L1Q7RTZ2 530 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 GGA1Q9UJY5 639 aa19.37■□□□□ 0.69
HMGXB4-206ENST00000466438 WNT10BO00744 389 aa19.36■□□□□ 0.69
HMGXB4-206ENST00000466438 AIMP1Q12904 312 aaKnown RBP19.36■□□□□ 0.69
HMGXB4-206ENST00000466438 SLC4A8Q2Y0W8 1093 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms