RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 TMEM51Q9NW97 253 aa23.08■■□□□ 1.29
SDF4-205ENST00000465727 TAF6LQ9Y6J9 622 aa23.08■■□□□ 1.29
SDF4-205ENST00000465727 UTYO14607 1347 aa23.08■■□□□ 1.28
SDF4-205ENST00000465727 NRDCO43847 1150 aa23.07■■□□□ 1.28
SDF4-205ENST00000465727 KSR2Q6VAB6 950 aa23.07■■□□□ 1.28
SDF4-205ENST00000465727 BBXQ8WY36 941 aaPredicted RBP23.07■■□□□ 1.28
SDF4-205ENST00000465727 ZNF589Q86UQ0 364 aaPredicted RBP23.07■■□□□ 1.28
SDF4-205ENST00000465727 ZNF446Q9NWS9 450 aa23.07■■□□□ 1.28
SDF4-205ENST00000465727 MAP3K2Q9Y2U5 619 aa23.07■■□□□ 1.28
SDF4-205ENST00000465727 NCAPD2Q15021 1401 aa23.06■■□□□ 1.28
SDF4-205ENST00000465727 BPIFA3Q9BQP9 254 aa23.06■■□□□ 1.28
SDF4-205ENST00000465727 U3KPZ7 1027 aaPredicted RBP23.06■■□□□ 1.28
SDF4-205ENST00000465727 NLRP6P59044 892 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 CCDC93Q567U6 631 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 Q6ZUG5 572 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 NOL10Q9BSC4 688 aaKnown RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 BOLA2Q9H3K6 86 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 GOLPH3LQ9H4A5 285 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 ESF1Q9H501 851 aaKnown RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 LMO7Q8WWI1 1683 aa23.05■■□□□ 1.28
SDF4-205ENST00000465727 RGPD8O14715 1765 aaPredicted RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 HSP90B1P14625 803 aaKnown RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 GTF2E1P29083 439 aaPredicted RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 CCDC8Q9H0W5 538 aaPredicted RBP23.05■■□□□ 1.28
SDF4-205ENST00000465727 CCP110O43303 1012 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 PFKFB2O60825 505 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 HMGB1P09429 215 aaKnown RBP23.04■■□□□ 1.28
SDF4-205ENST00000465727 NBPF11Q86T75 865 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 AOPEPQ8N6M6 819 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 DDX11Q96FC9 970 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 TNRQ92752 1358 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 SLC20A2Q08357 652 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 E4F1Q66K89 784 aaPredicted RBP23.04■■□□□ 1.28
SDF4-205ENST00000465727 LINS1Q8NG48 757 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 PPP1R13BQ96KQ4 1090 aa23.04■■□□□ 1.28
SDF4-205ENST00000465727 GRM8O00222 908 aa23.03■■□□□ 1.28
SDF4-205ENST00000465727 SCRN1Q12765 414 aa23.03■■□□□ 1.28
SDF4-205ENST00000465727 CYP2C19P33261 490 aa23.02■■□□□ 1.28
SDF4-205ENST00000465727 CHMP4CQ96CF2 233 aa23.02■■□□□ 1.28
SDF4-205ENST00000465727 ARGLU1Q9NWB6 273 aaPredicted RBP23.02■■□□□ 1.28
SDF4-205ENST00000465727 CEBPZQ03701 1054 aaKnown RBP23.02■■□□□ 1.28
SDF4-205ENST00000465727 TLR7Q9NYK1 1049 aaKnown RBP23.02■■□□□ 1.28
SDF4-205ENST00000465727 FHOD1Q9Y613 1164 aa23.02■■□□□ 1.28
SDF4-205ENST00000465727 SFPQP23246 707 aaKnown RBP eCLIP23.01■■□□□ 1.272e-6■■■□□ 17.6
SDF4-205ENST00000465727 FSIP1Q8NA03 581 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 NSUN7Q8NE18 718 aaKnown RBP23.01■■□□□ 1.27
SDF4-205ENST00000465727 USP28Q96RU2 1077 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.01■■□□□ 1.274e-12■□□□□ 10.1
SDF4-205ENST00000465727 ANXA1P04083 346 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 TPM4P67936 248 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 TEFQ10587 303 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 ERCC6LQ2NKX8 1250 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 SUCLG2Q96I99 432 aa23.01■■□□□ 1.27
SDF4-205ENST00000465727 SRRTQ9BXP5 876 aaKnown RBP23.01■■□□□ 1.27
SDF4-205ENST00000465727 PHLPP2Q6ZVD8 1323 aa23■■□□□ 1.27
SDF4-205ENST00000465727 ABCC6O95255 1503 aa23■■□□□ 1.27
SDF4-205ENST00000465727 BTBD11A6QL63 1104 aa23■■□□□ 1.27
SDF4-205ENST00000465727 CDK11BP21127 795 aaKnown RBP23■■□□□ 1.27
SDF4-205ENST00000465727 MRPS27Q92552 414 aaKnown RBP23■■□□□ 1.27
SDF4-205ENST00000465727 BICC1Q9H694 974 aaKnown RBP23■■□□□ 1.27
SDF4-205ENST00000465727 A0A1W2PQ27 194 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 A0A1W2PQ64 194 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 A0A1W2PQD8 194 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 CLCN6P51797 869 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 IRX5P78411 483 aaPredicted RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 ZRSR1Q15695 479 aaKnown RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 FMR1NBQ8N0W7 255 aaPredicted RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 KAZALD1Q96I82 304 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 ATP5JP18859 108 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 ME1P48163 572 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 CWF19L2Q2TBE0 894 aaKnown RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 SYT10Q6XYQ8 523 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 BCL11BQ9C0K0 894 aaPredicted RBP22.99■■□□□ 1.27
SDF4-205ENST00000465727 LGR6Q9HBX8 967 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 OVOS2A0A0G2JMS6 1433 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 ANKARQ7Z5J8 1434 aa22.99■■□□□ 1.27
SDF4-205ENST00000465727 TULP2O00295 520 aa22.98■■□□□ 1.27
SDF4-205ENST00000465727 ATP8B1O43520 1251 aa22.98■■□□□ 1.27
SDF4-205ENST00000465727 PNMA6AP0CW24 399 aaPredicted RBP22.98■■□□□ 1.27
SDF4-205ENST00000465727 ADALQ6DHV7 355 aa22.98■■□□□ 1.27
SDF4-205ENST00000465727 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
SDF4-205ENST00000465727 TSPYL1Q9H0U9 437 aa22.98■■□□□ 1.27
SDF4-205ENST00000465727 LAMA4Q16363 1823 aa22.98■■□□□ 1.27
SDF4-205ENST00000465727 PTPDC1A2A3K4 754 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 DDX58O95786 925 aaKnown RBP22.97■■□□□ 1.27
SDF4-205ENST00000465727 CYP21A2P08686 494 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 TPM1P09493 284 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 HSPA2P54652 639 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 AKAP4Q5JQC9 854 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 ARMCX5Q6P1M9 558 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 LTN1O94822 1766 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 COL15A1P39059 1388 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 KCNQ3O43525 872 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 ETF1P62495 437 aaKnown RBP22.97■■□□□ 1.27
SDF4-205ENST00000465727 TEX35Q5T0J7 233 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 SDF4Q9BRK5 362 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 SALL1Q9NSC2 1324 aa22.97■■□□□ 1.27
SDF4-205ENST00000465727 ERICH4A6NGS2 130 aa22.96■■□□□ 1.27
SDF4-205ENST00000465727 ZRANB2O95218 330 aaKnown RBP eCLIP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms