RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SPHKAPQ2M3C7 1700 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 C2CD2LO14523 706 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 TXLNAP40222 546 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 MAP2K3P46734 347 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 FOXK2Q01167 660 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 CTBSQ01459 385 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 RASSF7Q02833 373 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 SLC9A9Q8IVB4 645 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 OXCT2Q9BYC2 517 aaPredicted RBP10.89□□□□□ -0.67
USP54-208ENST00000461520 ENAMQ9NRM1 1142 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 TRPM2O94759 1503 aa10.89□□□□□ -0.67
USP54-208ENST00000461520 COL16A1Q07092 1604 aaPredicted RBP10.88□□□□□ -0.67
USP54-208ENST00000461520 HFM1A2PYH4 1435 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 TATP17735 454 aaPredicted RBP10.88□□□□□ -0.67
USP54-208ENST00000461520 FGFR3P22607 806 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 IRS1P35568 1242 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 ZNF326Q5BKZ1 582 aaKnown RBP10.88□□□□□ -0.67
USP54-208ENST00000461520 NLRP8Q86W28 1048 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 NEDD1Q8NHV4 660 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 L3MBTL2Q969R5 705 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 ZNF594Q96JF6 807 aaPredicted RBP10.88□□□□□ -0.67
USP54-208ENST00000461520 CALR3Q96L12 384 aaKnown RBP10.88□□□□□ -0.67
USP54-208ENST00000461520 ZIC5Q96T25 663 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 C19orf44Q9H6X5 657 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 PCDHGC4Q9Y5F7 938 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 JCADQ9P266 1359 aa10.88□□□□□ -0.67
USP54-208ENST00000461520 BMP4P12644 408 aa10.87□□□□□ -0.67
USP54-208ENST00000461520 FIGNL1Q6PIW4 674 aa10.87□□□□□ -0.67
USP54-208ENST00000461520 C14orf37Q86TY3 774 aa10.87□□□□□ -0.67
USP54-208ENST00000461520 ZDHHC3Q9NYG2 299 aa10.87□□□□□ -0.67
USP54-208ENST00000461520 AMOTL2Q9Y2J4 779 aa10.87□□□□□ -0.67
USP54-208ENST00000461520 MAFBQ9Y5Q3 323 aaPredicted RBP10.87□□□□□ -0.67
USP54-208ENST00000461520 SETBP1Q9Y6X0 1596 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 PALM3A6NDB9 673 aaPredicted RBP10.86□□□□□ -0.67
USP54-208ENST00000461520 RNF225M0QZC1 329 aaPredicted RBP10.86□□□□□ -0.67
USP54-208ENST00000461520 ATXN7O15265 892 aaPredicted RBP10.86□□□□□ -0.67
USP54-208ENST00000461520 OIP5O43482 229 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 GDF11O95390 407 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 NOS2P35228 1153 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 TEAD4Q15561 434 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 BICDL1Q6ZP65 573 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 C1orf229Q6ZS94 237 aaPredicted RBP10.86□□□□□ -0.67
USP54-208ENST00000461520 LARGE2Q8N3Y3 721 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 TMEM151AQ8N4L1 468 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 HCN2Q9UL51 889 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 ZNF232Q9UNY5 417 aa10.86□□□□□ -0.67
USP54-208ENST00000461520 PTPRUQ92729 1446 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 LRP6O75581 1613 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.85□□□□□ -0.67
USP54-208ENST00000461520 DCDC2BA2VCK2 349 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 SFI1A8K8P3 1242 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 ATF3P18847 181 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 SH3PXD2AQ5TCZ1 1133 aa10.85□□□□□ -0.67
USP54-208ENST00000461520 SCARF2Q96GP6 870 aaPredicted RBP10.85□□□□□ -0.67
USP54-208ENST00000461520 CNTNAP5Q8WYK1 1306 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 CLTCL1P53675 1640 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 NRXN3Q9Y4C0 1643 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 DKK1O94907 266 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 RASA1P20936 1047 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 KCTD17Q8N5Z5 321 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 TSEN2Q8NCE0 465 aaKnown RBP10.84□□□□□ -0.67
USP54-208ENST00000461520 PPP1R12CQ9BZL4 782 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 TSPAN10Q9H1Z9 355 aaPredicted RBP10.84□□□□□ -0.67
USP54-208ENST00000461520 NEXMIFQ5QGS0 1516 aa10.84□□□□□ -0.67
USP54-208ENST00000461520 SHPRHQ149N8 1683 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 MAPTP10636 758 aaKnown RBP10.83□□□□□ -0.68
USP54-208ENST00000461520 TNP2Q05952 138 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 MEX3CQ5U5Q3 659 aaKnown RBP10.83□□□□□ -0.68
USP54-208ENST00000461520 SIX5Q8N196 739 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 GALNT6Q8NCL4 622 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 GJA3Q9Y6H8 435 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 AHDC1Q5TGY3 1603 aaPredicted RBP10.83□□□□□ -0.68
USP54-208ENST00000461520 DCCP43146 1447 aa10.83□□□□□ -0.68
USP54-208ENST00000461520 METP08581 1390 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 XRN1Q8IZH2 1706 aaKnown RBP10.82□□□□□ -0.68
USP54-208ENST00000461520 SERTM1A2A2V5 107 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 SHISA8B8ZZ34 492 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 KHNYNO15037 678 aaKnown RBP10.82□□□□□ -0.68
USP54-208ENST00000461520 LRRC4BQ9NT99 713 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 SPATA31A6Q5VVP1 1343 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 RPGRIP1LQ68CZ1 1315 aa10.82□□□□□ -0.68
USP54-208ENST00000461520 CD33P20138 364 aa10.81□□□□□ -0.68
USP54-208ENST00000461520 GGA1Q9UJY5 639 aa10.81□□□□□ -0.68
USP54-208ENST00000461520 KIF1BO60333 1816 aa10.81□□□□□ -0.68
USP54-208ENST00000461520 EML1O00423 815 aa10.8□□□□□ -0.68
USP54-208ENST00000461520 ZNF772Q68DY9 489 aaPredicted RBP10.8□□□□□ -0.68
USP54-208ENST00000461520 LRRC69Q6ZNQ3 347 aa10.8□□□□□ -0.68
USP54-208ENST00000461520 C7orf43Q8WVR3 580 aa10.8□□□□□ -0.68
USP54-208ENST00000461520 EDARADDQ8WWZ3 215 aa10.8□□□□□ -0.68
USP54-208ENST00000461520 GDF2Q9UK05 429 aaPredicted RBP10.8□□□□□ -0.68
USP54-208ENST00000461520 RBM19Q9Y4C8 960 aaKnown RBP10.8□□□□□ -0.68
USP54-208ENST00000461520 DNMT3AQ9Y6K1 912 aaPredicted RBP10.8□□□□□ -0.68
USP54-208ENST00000461520 M0R2N6 131 aa10.79□□□□□ -0.68
USP54-208ENST00000461520 LMOD1P29536 600 aaPredicted RBP10.79□□□□□ -0.68
USP54-208ENST00000461520 BRINP3Q76B58 766 aa10.79□□□□□ -0.68
USP54-208ENST00000461520 BEND7Q8N7W2 519 aaPredicted RBP10.79□□□□□ -0.68
USP54-208ENST00000461520 GOLGA6L1Q8N7Z2 621 aa10.79□□□□□ -0.68
USP54-208ENST00000461520 HCN4Q9Y3Q4 1203 aa10.79□□□□□ -0.68
USP54-208ENST00000461520 PSMA6P60900 246 aaKnown RBP10.78□□□□□ -0.68
USP54-208ENST00000461520 CRTC2Q53ET0 693 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms