RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 WASHC4Q2M389 1173 aa21.82■■□□□ 1.08
SF3B4-202ENST00000457312 SLC9C1Q4G0N8 1177 aa21.82■■□□□ 1.08
SF3B4-202ENST00000457312 ZNF34Q8IZ26 560 aa21.82■■□□□ 1.08
SF3B4-202ENST00000457312 STXBP5LQ9Y2K9 1186 aa21.82■■□□□ 1.08
SF3B4-202ENST00000457312 IGF2BP3O00425 579 aaKnown RBP eCLIP21.81■■□□□ 1.08
SF3B4-202ENST00000457312 PTPN12Q05209 780 aaKnown RBP21.81■■□□□ 1.08
SF3B4-202ENST00000457312 TCIRG1Q13488 830 aa21.81■■□□□ 1.08
SF3B4-202ENST00000457312 PRDM6Q9NQX0 595 aa21.81■■□□□ 1.08
SF3B4-202ENST00000457312 WTIPA6NIX2 430 aaPredicted RBP21.8■■□□□ 1.08
SF3B4-202ENST00000457312 VIL1P09327 827 aaKnown RBP21.8■■□□□ 1.08
SF3B4-202ENST00000457312 TTLL7Q6ZT98 887 aa21.8■■□□□ 1.08
SF3B4-202ENST00000457312 NGEFQ8N5V2 710 aa21.8■■□□□ 1.08
SF3B4-202ENST00000457312 SHISA4Q96DD7 197 aa21.8■■□□□ 1.08
SF3B4-202ENST00000457312 PTCH2Q9Y6C5 1203 aa21.8■■□□□ 1.08
SF3B4-202ENST00000457312 TTC28Q96AY4 2481 aa21.8■■□□□ 1.08
SF3B4-202ENST00000457312 MYCP01106 439 aaPredicted RBP21.79■■□□□ 1.08
SF3B4-202ENST00000457312 GRAPQ13588 217 aa21.79■■□□□ 1.08
SF3B4-202ENST00000457312 SLC10A5Q5PT55 438 aa21.79■■□□□ 1.08
SF3B4-202ENST00000457312 NBPF11Q86T75 865 aa21.79■■□□□ 1.08
SF3B4-202ENST00000457312 GRAPLQ8TC17 118 aaPredicted RBP21.79■■□□□ 1.08
SF3B4-202ENST00000457312 MANSC4A6NHS7 340 aaPredicted RBP21.78■■□□□ 1.08
SF3B4-202ENST00000457312 RIMBP2O15034 1052 aa21.78■■□□□ 1.08
SF3B4-202ENST00000457312 CRHR2Q13324 411 aa21.78■■□□□ 1.08
SF3B4-202ENST00000457312 DOK7Q18PE1 504 aa21.78■■□□□ 1.08
SF3B4-202ENST00000457312 KIF6Q6ZMV9 814 aa21.78■■□□□ 1.08
SF3B4-202ENST00000457312 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.78■■□□□ 1.08
SF3B4-202ENST00000457312 ZBTB3Q9H5J0 574 aa21.78■■□□□ 1.08
SF3B4-202ENST00000457312 PPP1R42Q7Z4L9 355 aa21.77■■□□□ 1.08
SF3B4-202ENST00000457312 DEFB123Q8N688 67 aa21.77■■□□□ 1.08
SF3B4-202ENST00000457312 ZSWIM8A7E2V4 1837 aa21.76■■□□□ 1.07
SF3B4-202ENST00000457312 SP3Q02447 781 aa21.76■■□□□ 1.07
SF3B4-202ENST00000457312 POLR3GLQ9BT43 218 aa21.76■■□□□ 1.07
SF3B4-202ENST00000457312 ERBB4Q15303 1308 aa21.76■■□□□ 1.07
SF3B4-202ENST00000457312 COL4A1P02462 1669 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 ZBTB7BO15156 539 aaPredicted RBP21.75■■□□□ 1.07
SF3B4-202ENST00000457312 INHBEP58166 350 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 GPR153Q6NV75 609 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 Q7L0L9 218 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 PANK3Q9H999 370 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 MYOZ2Q9NPC6 264 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 POLLQ9UGP5 575 aa21.75■■□□□ 1.07
SF3B4-202ENST00000457312 NF2P35240 595 aa21.74■■□□□ 1.07
SF3B4-202ENST00000457312 PARP10Q53GL7 1025 aa21.74■■□□□ 1.07
SF3B4-202ENST00000457312 LDLRAD1Q5T700 205 aa21.74■■□□□ 1.07
SF3B4-202ENST00000457312 DDX46Q7L014 1031 aaKnown RBP21.74■■□□□ 1.07
SF3B4-202ENST00000457312 TMC4Q7Z404 712 aa21.74■■□□□ 1.07
SF3B4-202ENST00000457312 ANKRD13DQ6ZTN6 518 aa21.73■■□□□ 1.07
SF3B4-202ENST00000457312 GIGYF2Q6Y7W6 1299 aaKnown RBP21.72■■□□□ 1.07
SF3B4-202ENST00000457312 ARMC9Q7Z3E5 817 aa21.72■■□□□ 1.07
SF3B4-202ENST00000457312 UBE2Q1Q7Z7E8 422 aa21.72■■□□□ 1.07
SF3B4-202ENST00000457312 AGBL3Q8NEM8 1001 aa21.72■■□□□ 1.07
SF3B4-202ENST00000457312 NECTIN2Q92692 538 aa21.72■■□□□ 1.07
SF3B4-202ENST00000457312 UTP14AQ9BVJ6 771 aaKnown RBP21.72■■□□□ 1.07
SF3B4-202ENST00000457312 COL3A1P02461 1466 aaPredicted RBP21.71■■□□□ 1.07
SF3B4-202ENST00000457312 C6orf229H3BNL8 230 aa21.71■■□□□ 1.07
SF3B4-202ENST00000457312 DIAPH1O60610 1272 aaKnown RBP21.71■■□□□ 1.07
SF3B4-202ENST00000457312 PRKG1Q13976 671 aa21.71■■□□□ 1.07
SF3B4-202ENST00000457312 RSBN1LQ6PCB5 846 aaPredicted RBP21.71■■□□□ 1.07
SF3B4-202ENST00000457312 SH3TC2Q8TF17 1288 aa21.71■■□□□ 1.07
SF3B4-202ENST00000457312 HTATIP2Q9BUP3 242 aa21.71■■□□□ 1.07
SF3B4-202ENST00000457312 NSFL1CQ9UNZ2 370 aaKnown RBP21.71■■□□□ 1.07
SF3B4-202ENST00000457312 NR2E3Q9Y5X4 410 aa21.71■■□□□ 1.07
SF3B4-202ENST00000457312 ZBTB48P10074 688 aaPredicted RBP21.7■■□□□ 1.06
SF3B4-202ENST00000457312 HCLS1P14317 486 aaPredicted RBP21.7■■□□□ 1.06
SF3B4-202ENST00000457312 GMLQ99445 158 aa21.7■■□□□ 1.06
SF3B4-202ENST00000457312 MTMR10Q9NXD2 777 aa21.7■■□□□ 1.06
SF3B4-202ENST00000457312 ALPK3Q96L96 1907 aa21.69■■□□□ 1.06
SF3B4-202ENST00000457312 GPSM2P81274 684 aa21.69■■□□□ 1.06
SF3B4-202ENST00000457312 WNK4Q96J92 1243 aa21.69■■□□□ 1.06
SF3B4-202ENST00000457312 EYA3Q99504 573 aa21.69■■□□□ 1.06
SF3B4-202ENST00000457312 USP17L8P0C7I0 530 aa21.68■■□□□ 1.06
SF3B4-202ENST00000457312 NBPF9Q3BBW0 867 aa21.68■■□□□ 1.06
SF3B4-202ENST00000457312 ANGEL1Q9UNK9 670 aaKnown RBP21.68■■□□□ 1.06
SF3B4-202ENST00000457312 COL9A1P20849 921 aa21.67■■□□□ 1.06
SF3B4-202ENST00000457312 FZD1Q9UP38 647 aa21.67■■□□□ 1.06
SF3B4-202ENST00000457312 EYSQ5T1H1 3165 aa21.67■■□□□ 1.06
SF3B4-202ENST00000457312 RRP7AQ9Y3A4 280 aaKnown RBP21.66■■□□□ 1.06
SF3B4-202ENST00000457312 MYL6BP14649 208 aa21.65■■□□□ 1.06
SF3B4-202ENST00000457312 TBC1D16Q8TBP0 767 aa21.65■■□□□ 1.06
SF3B4-202ENST00000457312 STAP2Q9UGK3 403 aa21.65■■□□□ 1.06
SF3B4-202ENST00000457312 MUC3AQ02505 3323 aa21.65■■□□□ 1.06
SF3B4-202ENST00000457312 MTFR1Q15390 333 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 OTUD7BQ6GQQ9 843 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 MCM10Q7L590 875 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 CLMNQ96JQ2 1002 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 OTOFQ9HC10 1997 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 SSC5DA1L4H1 1573 aa21.64■■□□□ 1.05
SF3B4-202ENST00000457312 CELF1Q92879 486 aaKnown RBP21.63■■□□□ 1.05
SF3B4-202ENST00000457312 SLC10A4Q96EP9 437 aa21.63■■□□□ 1.05
SF3B4-202ENST00000457312 PHACTR3Q96KR7 559 aa21.63■■□□□ 1.05
SF3B4-202ENST00000457312 PTPN18Q99952 460 aa21.63■■□□□ 1.05
SF3B4-202ENST00000457312 ARHGEF6Q15052 776 aa21.62■■□□□ 1.05
SF3B4-202ENST00000457312 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.62■■□□□ 1.05
SF3B4-202ENST00000457312 WNT10BO00744 389 aa21.61■■□□□ 1.05
SF3B4-202ENST00000457312 GJA5P36382 358 aa21.61■■□□□ 1.05
SF3B4-202ENST00000457312 MAP3K11Q16584 847 aa21.61■■□□□ 1.05
SF3B4-202ENST00000457312 ZC3H12CQ9C0D7 883 aaKnown RBP21.61■■□□□ 1.05
SF3B4-202ENST00000457312 PRUNE2Q8WUY3 3088 aa21.61■■□□□ 1.05
SF3B4-202ENST00000457312 NKX2-3Q8TAU0 364 aa21.6■■□□□ 1.05
SF3B4-202ENST00000457312 COL1A1P02452 1464 aaPredicted RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms