RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 ANKRD1Q15327 319 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 SLC27A3Q5K4L6 730 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 RC3H1Q5TC82 1133 aaKnown RBP15.34■□□□□ 0.05
COL28A1-204ENST00000444268 JAKMIP1Q96N16 626 aaKnown RBP15.34■□□□□ 0.05
COL28A1-204ENST00000444268 HAUS7Q99871 368 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 RPS6KA4O75676 772 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 PHF14O94880 888 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 EN1Q05925 392 aaPredicted RBP15.33■□□□□ 0.04
COL28A1-204ENST00000444268 KRT32Q14532 448 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 CREB3L3Q68CJ9 461 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 NOL8Q76FK4 1167 aaKnown RBP15.33■□□□□ 0.04
COL28A1-204ENST00000444268 RUFY3Q7L099 469 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 FAM227BQ96M60 508 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 ISCA1Q9BUE6 129 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 PDRG1Q9NUG6 133 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 CHMP3Q9Y3E7 222 aa15.33■□□□□ 0.04
COL28A1-204ENST00000444268 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.33■□□□□ 0.04
COL28A1-204ENST00000444268 RPAP1Q9BWH6 1393 aaPredicted RBP15.33■□□□□ 0.04
COL28A1-204ENST00000444268 CAMTA2O94983 1202 aa15.32■□□□□ 0.04
COL28A1-204ENST00000444268 TCIRG1Q13488 830 aa15.32■□□□□ 0.04
COL28A1-204ENST00000444268 AK7Q96M32 723 aa15.32■□□□□ 0.04
COL28A1-204ENST00000444268 NUP98P52948 1817 aa15.32■□□□□ 0.04
COL28A1-204ENST00000444268 A0A0D9SFI3 127 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 GPTP24298 496 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 ZNF445P59923 1031 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 EZH2Q15910 746 aaKnown RBP15.31■□□□□ 0.04
COL28A1-204ENST00000444268 TSGA10IPQ3SY00 556 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 HSP90AB3PQ58FF7 597 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 GIGYF2Q6Y7W6 1299 aaKnown RBP15.31■□□□□ 0.04
COL28A1-204ENST00000444268 ALDH8A1Q9H2A2 487 aaPredicted RBP15.31■□□□□ 0.04
COL28A1-204ENST00000444268 SRP68Q9UHB9 627 aaKnown RBP15.31■□□□□ 0.04
COL28A1-204ENST00000444268 ATP6V1DQ9Y5K8 247 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 EYA2O00167 538 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 ZNF827Q17R98 1081 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 SMC3Q9UQE7 1217 aa15.31■□□□□ 0.04
COL28A1-204ENST00000444268 RTCBQ9Y3I0 505 aaKnown RBP15.31■□□□□ 0.04
COL28A1-204ENST00000444268 ANKRD36CQ5JPF3 1778 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 UBR3Q6ZT12 1888 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 SLC27A2O14975 620 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 PRPF40AO75400 957 aaKnown RBP15.3■□□□□ 0.04
COL28A1-204ENST00000444268 LRRFIP1Q32MZ4 808 aaKnown RBP15.3■□□□□ 0.04
COL28A1-204ENST00000444268 DEFB132Q7Z7B7 95 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.3■□□□□ 0.04
COL28A1-204ENST00000444268 ARHGEF1Q92888 912 aaKnown RBP15.3■□□□□ 0.04
COL28A1-204ENST00000444268 DBNDD2Q9BQY9 259 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 PLA2G12BQ9BX93 195 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 U3KPZ7 1027 aaPredicted RBP15.3■□□□□ 0.04
COL28A1-204ENST00000444268 BCORQ6W2J9 1755 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 ZNF609O15014 1411 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 C4AP0C0L4 1744 aa15.3■□□□□ 0.04
COL28A1-204ENST00000444268 PCCAP05165 728 aaPredicted RBP15.29■□□□□ 0.04
COL28A1-204ENST00000444268 NCLP19338 710 aaKnown RBP15.29■□□□□ 0.04
COL28A1-204ENST00000444268 CCDC57Q2TAC2 916 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 USPL1Q5W0Q7 1092 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 BLOC1S2Q6QNY1 142 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 ATG9AQ7Z3C6 839 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 KBTBD3Q8NAB2 608 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 CAMKK2Q96RR4 588 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 SH3TC1Q8TE82 1336 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 ERVV-1B6SEH8 477 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 FAM43AQ8N2R8 423 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 SYAP1Q96A49 352 aaPredicted RBP15.29■□□□□ 0.04
COL28A1-204ENST00000444268 BCL2L12Q9HB09 334 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 AKAP2Q9Y2D5 859 aa15.29■□□□□ 0.04
COL28A1-204ENST00000444268 RGPD3A6NKT7 1758 aaPredicted RBP15.28■□□□□ 0.04
COL28A1-204ENST00000444268 RGPD4Q7Z3J3 1758 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 UBN2Q6ZU65 1347 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 TAF5LO75529 589 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 MCMDC2Q4G0Z9 681 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 ZBTB38Q8NAP3 1195 aaPredicted RBP15.28■□□□□ 0.04
COL28A1-204ENST00000444268 ANP32BQ92688 251 aaKnown RBP15.28■□□□□ 0.04
COL28A1-204ENST00000444268 DNAJC2Q99543 621 aaKnown RBP15.28■□□□□ 0.04
COL28A1-204ENST00000444268 SCN7AQ01118 1682 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 CDHR2Q9BYE9 1310 aa15.28■□□□□ 0.04
COL28A1-204ENST00000444268 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.27■□□□□ 0.04
COL28A1-204ENST00000444268 CSPP1Q1MSJ5 1256 aa15.27■□□□□ 0.04
COL28A1-204ENST00000444268 ADCK5Q3MIX3 580 aa15.27■□□□□ 0.04
COL28A1-204ENST00000444268 CAVIN1Q6NZI2 390 aaKnown RBP15.27■□□□□ 0.04
COL28A1-204ENST00000444268 SYNE4Q8N205 404 aa15.27■□□□□ 0.04
COL28A1-204ENST00000444268 HELLSQ9NRZ9 838 aa15.27■□□□□ 0.04
COL28A1-204ENST00000444268 ABCC12Q96J65 1359 aa15.27■□□□□ 0.03
COL28A1-204ENST00000444268 FAM177BA6PVY3 158 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 ZSCAN22P10073 491 aaPredicted RBP15.26■□□□□ 0.03
COL28A1-204ENST00000444268 ZSCAN23Q3MJ62 389 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 NLRP10Q86W26 655 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 ZNF34Q8IZ26 560 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 AKT1S1Q96B36 256 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 NEUROD6Q96NK8 337 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 PAG1Q9NWQ8 432 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 CEP126Q9P2H0 1117 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 STX6O43752 255 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 PDCP20941 246 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 RPS6KB1P23443 525 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 TRAPPC3LQ5T215 181 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 TMEM87AQ8NBN3 555 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 ANO8Q9HCE9 1232 aaPredicted RBP15.26■□□□□ 0.03
COL28A1-204ENST00000444268 NARFQ9UHQ1 456 aa15.26■□□□□ 0.03
COL28A1-204ENST00000444268 HMGB1P09429 215 aaKnown RBP15.25■□□□□ 0.03
COL28A1-204ENST00000444268 SF3B2Q13435 895 aaKnown RBP15.25■□□□□ 0.03
COL28A1-204ENST00000444268 BICDL1Q6ZP65 573 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms