RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 INTS3Q68E01 1043 aaKnown RBP12.96□□□□□ -0.33
SMPD4-208ENST00000439029 MYCP01106 439 aaPredicted RBP12.95□□□□□ -0.34
SMPD4-208ENST00000439029 VIL1P09327 827 aaKnown RBP12.95□□□□□ -0.34
SMPD4-208ENST00000439029 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
SMPD4-208ENST00000439029 G3V3G9 751 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 U2AF1L5P0DN76 240 aaPredicted RBP12.94□□□□□ -0.34
SMPD4-208ENST00000439029 EIF4A1P60842 406 aaKnown RBP12.94□□□□□ -0.34
SMPD4-208ENST00000439029 U2AF1Q01081 240 aaKnown RBP eCLIP12.94□□□□□ -0.34
SMPD4-208ENST00000439029 PTPN12Q05209 780 aaKnown RBP12.94□□□□□ -0.34
SMPD4-208ENST00000439029 SREBF2Q12772 1141 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 PROSER3Q2NL68 480 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 DCAF8Q5TAQ9 597 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 CHRDL2Q6WN34 429 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 NLRP10Q86W26 655 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 CD99L2Q8TCZ2 262 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 FZD1Q9UP38 647 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 PTPN22Q9Y2R2 807 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 SZT2Q5T011 3432 aa12.94□□□□□ -0.34
SMPD4-208ENST00000439029 COL4A1P02462 1669 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 PER1O15534 1290 aaPredicted RBP12.93□□□□□ -0.34
SMPD4-208ENST00000439029 EIF2S2P20042 333 aaKnown RBP12.93□□□□□ -0.34
SMPD4-208ENST00000439029 ZNF280AP59817 542 aaPredicted RBP12.93□□□□□ -0.34
SMPD4-208ENST00000439029 AIMP1Q12904 312 aaKnown RBP12.93□□□□□ -0.34
SMPD4-208ENST00000439029 TBC1D16Q8TBP0 767 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 OTUD5Q96G74 571 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 EYA3Q99504 573 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 MYOZ2Q9NPC6 264 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 ANKRD36CQ5JPF3 1778 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 CUL9Q8IWT3 2517 aa12.93□□□□□ -0.34
SMPD4-208ENST00000439029 SH3TC1Q8TE82 1336 aa12.92□□□□□ -0.34
SMPD4-208ENST00000439029 NBPF9Q3BBW0 867 aa12.92□□□□□ -0.34
SMPD4-208ENST00000439029 RSBN1LQ6PCB5 846 aaPredicted RBP12.92□□□□□ -0.34
SMPD4-208ENST00000439029 ZC3H12CQ9C0D7 883 aaKnown RBP12.92□□□□□ -0.34
SMPD4-208ENST00000439029 LRRC37AA6NMS7 1700 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 USP17L8P0C7I0 530 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 CAP1Q01518 475 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 TCIRG1Q13488 830 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 PDIA6Q15084 440 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 RTL5Q5HYW3 569 aaPredicted RBP12.91□□□□□ -0.34
SMPD4-208ENST00000439029 SPRYD7Q5W111 196 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 TMC4Q7Z404 712 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 LRP10Q7Z4F1 713 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 NECTIN2Q92692 538 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 ARMC5Q96C12 935 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 TMEM106CQ9BVX2 250 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 CFHR5Q9BXR6 569 aa12.91□□□□□ -0.34
SMPD4-208ENST00000439029 HTATSF1O43719 755 aaKnown RBP12.9□□□□□ -0.34
SMPD4-208ENST00000439029 UFL1O94874 794 aa12.9□□□□□ -0.34
SMPD4-208ENST00000439029 MXD3Q9BW11 206 aa12.9□□□□□ -0.34
SMPD4-208ENST00000439029 RBM27Q9P2N5 1060 aaKnown RBP12.9□□□□□ -0.34
SMPD4-208ENST00000439029 RBBP6Q7Z6E9 1792 aaKnown RBP12.89□□□□□ -0.35
SMPD4-208ENST00000439029 HTTP42858 3142 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 IGF2BP3O00425 579 aaKnown RBP eCLIP12.89□□□□□ -0.35
SMPD4-208ENST00000439029 NF2P35240 595 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 COPS6Q7L5N1 327 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 IFNL1Q8IU54 200 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 AGBL3Q8NEM8 1001 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 PNISRQ8TF01 805 aaKnown RBP12.89□□□□□ -0.35
SMPD4-208ENST00000439029 XAGE3Q8WTP9 111 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 CFAP53Q96M91 514 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 EFCC1Q9HA90 598 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 ANGEL1Q9UNK9 670 aaKnown RBP12.89□□□□□ -0.35
SMPD4-208ENST00000439029 NUDCQ9Y266 331 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
SMPD4-208ENST00000439029 PITPNM2Q9BZ72 1349 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 SASH1O94885 1247 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 ALDH1A1P00352 501 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 SLC4A8Q2Y0W8 1093 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 ARMC9Q7Z3E5 817 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 FAM89AQ96GI7 184 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 ERO1AQ96HE7 468 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 GMLQ99445 158 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 ANKIB1Q9P2G1 1089 aa12.88□□□□□ -0.35
SMPD4-208ENST00000439029 DDX60Q8IY21 1712 aaKnown RBP12.88□□□□□ -0.35
SMPD4-208ENST00000439029 CRHR2Q13324 411 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 HSP90AB3PQ58FF7 597 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 FBXW7Q969H0 707 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 ZNF333Q96JL9 665 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 CLMNQ96JQ2 1002 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 CENPFP49454 3210 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 ZNF609O15014 1411 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 ERBB4Q15303 1308 aa12.87□□□□□ -0.35
SMPD4-208ENST00000439029 BRCA2P51587 3418 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 MANSC4A6NHS7 340 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-208ENST00000439029 WTIPA6NIX2 430 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-208ENST00000439029 ATP5J2-PTCD1G3V325 749 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 RPS8P62241 208 aaKnown RBP12.86□□□□□ -0.35
SMPD4-208ENST00000439029 DPF3Q92784 378 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 SLC10A4Q96EP9 437 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 SEC31BQ9NQW1 1179 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 GGA1Q9UJY5 639 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 TIMELESSQ9UNS1 1208 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 PTCH2Q9Y6C5 1203 aa12.86□□□□□ -0.35
SMPD4-208ENST00000439029 USP17L3A6NCW0 530 aa12.85□□□□□ -0.35
SMPD4-208ENST00000439029 USP17L4A6NCW7 530 aa12.85□□□□□ -0.35
SMPD4-208ENST00000439029 SF3B3Q15393 1217 aaKnown RBP12.85□□□□□ -0.35
SMPD4-208ENST00000439029 LDLRAD1Q5T700 205 aa12.85□□□□□ -0.35
SMPD4-208ENST00000439029 USP17L1Q7RTZ2 530 aa12.85□□□□□ -0.35
SMPD4-208ENST00000439029 WNT10BO00744 389 aa12.84□□□□□ -0.35
SMPD4-208ENST00000439029 SP3Q02447 781 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms