RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 OXER1Q8TDS5 423 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 NECTIN2Q92692 538 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 AIDAQ96BJ3 306 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 CRAMP1Q96RY5 1269 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 LAS1LQ9Y4W2 734 aaKnown RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 KDM3BQ7LBC6 1761 aa10.11□□□□□ -0.79
VPS50-204ENST00000438395 ARFGEF2Q9Y6D5 1785 aa10.11□□□□□ -0.79
VPS50-204ENST00000438395 NTSR2O95665 410 aa10.11□□□□□ -0.79
VPS50-204ENST00000438395 AIMP1Q12904 312 aaKnown RBP10.11□□□□□ -0.79
VPS50-204ENST00000438395 DDX10Q13206 875 aaKnown RBP10.11□□□□□ -0.79
VPS50-204ENST00000438395 CCDC146Q8IYE0 955 aa10.11□□□□□ -0.79
VPS50-204ENST00000438395 ZNF34Q8IZ26 560 aa10.11□□□□□ -0.79
VPS50-204ENST00000438395 DDX27Q96GQ7 796 aaKnown RBP10.11□□□□□ -0.79
VPS50-204ENST00000438395 CACNA1SQ13698 1873 aa10.1□□□□□ -0.79
VPS50-204ENST00000438395 TMEM88BA6NKF7 163 aa10.1□□□□□ -0.79
VPS50-204ENST00000438395 FZD9O00144 591 aa10.1□□□□□ -0.79
VPS50-204ENST00000438395 PPIP5K2O43314 1243 aa10.1□□□□□ -0.79
VPS50-204ENST00000438395 COL13A1Q5TAT6 717 aaPredicted RBP10.1□□□□□ -0.79
VPS50-204ENST00000438395 SUPT20HQ8NEM7 779 aa10.1□□□□□ -0.79
VPS50-204ENST00000438395 CCDC88AQ3V6T2 1871 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 ANXA1P04083 346 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 PROSER3Q2NL68 480 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 HDGFL1Q5TGJ6 251 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 DPP8Q6V1X1 898 aaPredicted RBP10.09□□□□□ -0.79
VPS50-204ENST00000438395 DDX46Q7L014 1031 aaKnown RBP10.09□□□□□ -0.79
VPS50-204ENST00000438395 COPS6Q7L5N1 327 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 XAGE3Q8WTP9 111 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 RUNDC1Q96C34 613 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 DDX21Q9NR30 783 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS50-204ENST00000438395 TRMT112Q9UI30 125 aaKnown RBP10.09□□□□□ -0.79
VPS50-204ENST00000438395 ABT1Q9ULW3 272 aaKnown RBP10.09□□□□□ -0.79
VPS50-204ENST00000438395 CNTNAP1P78357 1384 aa10.09□□□□□ -0.79
VPS50-204ENST00000438395 DICER1Q9UPY3 1922 aaKnown RBP10.09□□□□□ -0.79
VPS50-204ENST00000438395 SH3TC1Q8TE82 1336 aa10.08□□□□□ -0.8
VPS50-204ENST00000438395 TBC1D12O60347 775 aa10.08□□□□□ -0.8
VPS50-204ENST00000438395 PDIA6Q15084 440 aa10.08□□□□□ -0.8
VPS50-204ENST00000438395 CNTROBQ8N137 903 aa10.08□□□□□ -0.8
VPS50-204ENST00000438395 ATP6V0A2Q9Y487 856 aa10.08□□□□□ -0.8
VPS50-204ENST00000438395 PASKQ96RG2 1323 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 DLG5Q8TDM6 1919 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 PCNTO95613 3336 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 BBOX1O75936 387 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 HOXB7P09629 217 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 HCLS1P14317 486 aaPredicted RBP10.07□□□□□ -0.8
VPS50-204ENST00000438395 CALD1Q05682 793 aaKnown RBP10.07□□□□□ -0.8
VPS50-204ENST00000438395 MFSD10Q14728 455 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 AOC3Q16853 763 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 MAP1SQ66K74 1059 aaPredicted RBP10.07□□□□□ -0.8
VPS50-204ENST00000438395 PAXIP1Q6ZW49 1069 aaPredicted RBP10.07□□□□□ -0.8
VPS50-204ENST00000438395 NLRP10Q86W26 655 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 MPNDQ8N594 471 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 VPS33BQ9H267 617 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 CHPF2Q9P2E5 772 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 DBF4Q9UBU7 674 aaPredicted RBP10.07□□□□□ -0.8
VPS50-204ENST00000438395 ABCC4O15439 1325 aa10.07□□□□□ -0.8
VPS50-204ENST00000438395 SCN4AP35499 1836 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 CHL1O00533 1208 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 HSP90B1P14625 803 aaKnown RBP10.06□□□□□ -0.8
VPS50-204ENST00000438395 LSM11P83369 360 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS50-204ENST00000438395 TCIRG1Q13488 830 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 SLC10A5Q5PT55 438 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 TMC4Q7Z404 712 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 PLBD2Q8NHP8 589 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 EMILIN3Q9NT22 766 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 ZNRF3Q9ULT6 936 aa10.06□□□□□ -0.8
VPS50-204ENST00000438395 ITGBL1O95965 494 aaPredicted RBP10.05□□□□□ -0.8
VPS50-204ENST00000438395 CTCFP49711 727 aaPredicted RBP10.05□□□□□ -0.8
VPS50-204ENST00000438395 GRAPQ13588 217 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 TNIP1Q15025 636 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 KRT24Q2M2I5 525 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 USP50Q70EL3 339 aaPredicted RBP10.05□□□□□ -0.8
VPS50-204ENST00000438395 LRP10Q7Z4F1 713 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 GRAPLQ8TC17 118 aaPredicted RBP10.05□□□□□ -0.8
VPS50-204ENST00000438395 CFAP44Q96MT7 982 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 BCL2L13Q9BXK5 485 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 CHMP4AQ9BY43 222 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 HYPKQ9NX55 129 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 SNED1Q8TER0 1413 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 NUP98P52948 1817 aa10.05□□□□□ -0.8
VPS50-204ENST00000438395 EPS15P42566 896 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 VEGFBP49765 207 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 PSEN2P49810 448 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 SCNN1DP51172 638 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 GRM1Q13255 1194 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 DEFB115Q30KQ5 88 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 DUSP27Q5VZP5 1158 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 CIAPIN1Q6FI81 312 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 SP8Q8IXZ3 490 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 SPRYD3Q8NCJ5 442 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 BEGAINQ9BUH8 593 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 ADARB2Q9NS39 739 aaKnown RBP10.04□□□□□ -0.8
VPS50-204ENST00000438395 ADAMTS8Q9UP79 889 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 CDHR2Q9BYE9 1310 aa10.04□□□□□ -0.8
VPS50-204ENST00000438395 RASSF10A6NK89 507 aa10.03□□□□□ -0.8
VPS50-204ENST00000438395 ECE1P42892 770 aa10.03□□□□□ -0.8
VPS50-204ENST00000438395 GMPSP49915 693 aaPredicted RBP10.03□□□□□ -0.8
VPS50-204ENST00000438395 MAP2K1Q02750 393 aaPredicted RBP10.03□□□□□ -0.8
VPS50-204ENST00000438395 KIAA2012Q0VF49 1180 aa10.03□□□□□ -0.8
VPS50-204ENST00000438395 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
VPS50-204ENST00000438395 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms