RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ZNF830Q96NB3 372 aaPredicted RBP16.94■□□□□ 0.3
LIG1-202ENST00000427526 ATG3Q9NT62 314 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 UQCRHLA0A096LP55 91 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 UQCRHP07919 91 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 DNAJC10Q8IXB1 793 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 RFX7Q2KHR2 1363 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 CASP7P55210 303 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 KRT32Q14532 448 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 SASS6Q6UVJ0 657 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 MPNDQ8N594 471 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 EXOC5O00471 708 aa16.93■□□□□ 0.3
LIG1-202ENST00000427526 TOGARAM1Q9Y4F4 1720 aa16.93■□□□□ 0.3
LIG1-202ENST00000427526 DISP2A7MBM2 1401 aa16.93■□□□□ 0.3
LIG1-202ENST00000427526 ZNF609O15014 1411 aa16.93■□□□□ 0.3
LIG1-202ENST00000427526 CCDC192P0DO97 292 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 LIG1P18858 919 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 HAUS7Q99871 368 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 TTC12Q9H892 705 aaPredicted RBP16.92■□□□□ 0.3
LIG1-202ENST00000427526 UBR2Q8IWV8 1755 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 LTBP4Q8N2S1 1624 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 SYTL4Q96C24 671 aaPredicted RBP16.92■□□□□ 0.3
LIG1-202ENST00000427526 NEK1Q96PY6 1258 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 SCAND2PQ9GZW5 306 aaPredicted RBP16.92■□□□□ 0.3
LIG1-202ENST00000427526 NDUFB9Q9Y6M9 179 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 LAMB4A4D0S4 1761 aa16.92■□□□□ 0.3
LIG1-202ENST00000427526 AHDC1Q5TGY3 1603 aaPredicted RBP16.92■□□□□ 0.3
LIG1-202ENST00000427526 CHGBP05060 677 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 PIP4K2BP78356 416 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 ARFGEF2Q9Y6D5 1785 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 AFDNP55196 1824 aaKnown RBP16.91■□□□□ 0.3
LIG1-202ENST00000427526 NUTM2BA6NNL0 878 aaPredicted RBP16.91■□□□□ 0.3
LIG1-202ENST00000427526 NUTM2EB1AL46 878 aaPredicted RBP16.91■□□□□ 0.3
LIG1-202ENST00000427526 H7C1W4 665 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 STK3Q13188 491 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 NOLC1Q14978 699 aaKnown RBP eCLIP16.91■□□□□ 0.38e-7■■■□□ 15.4
LIG1-202ENST00000427526 NUTM2AQ8IVF1 878 aaPredicted RBP16.91■□□□□ 0.3
LIG1-202ENST00000427526 GTF3C6Q969F1 213 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 DBNDD2Q9BQY9 259 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 COL14A1Q05707 1796 aaKnown RBP16.91■□□□□ 0.3
LIG1-202ENST00000427526 LMBR1LQ6UX01 489 aa16.91■□□□□ 0.3
LIG1-202ENST00000427526 PAPPAQ13219 1627 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 DYNC1I1O14576 645 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 MCMDC2Q4G0Z9 681 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 SEC62Q99442 399 aaKnown RBP16.9■□□□□ 0.3
LIG1-202ENST00000427526 CWC25Q9NXE8 425 aaPredicted RBP16.9■□□□□ 0.3
LIG1-202ENST00000427526 U3KPZ7 1027 aaPredicted RBP16.9■□□□□ 0.3
LIG1-202ENST00000427526 COL16A1Q07092 1604 aaPredicted RBP16.9■□□□□ 0.3
LIG1-202ENST00000427526 CYP21A2P08686 494 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 MAP3K11Q16584 847 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 CCDC129Q6ZRS4 1044 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 LEO1Q8WVC0 666 aaPredicted RBP16.9■□□□□ 0.3
LIG1-202ENST00000427526 NUP62CLQ9H1M0 184 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 SPTLC3Q9NUV7 552 aa16.9■□□□□ 0.3
LIG1-202ENST00000427526 FOXO4P98177 505 aa16.89■□□□□ 0.29
LIG1-202ENST00000427526 SLC4A9Q96Q91 983 aa16.89■□□□□ 0.29
LIG1-202ENST00000427526 TFIP11Q9UBB9 837 aaKnown RBP16.89■□□□□ 0.29
LIG1-202ENST00000427526 RBM43Q6ZSC3 357 aaKnown RBP16.89■□□□□ 0.29
LIG1-202ENST00000427526 SPATA32Q96LK8 384 aa16.89■□□□□ 0.29
LIG1-202ENST00000427526 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.29
LIG1-202ENST00000427526 MRVI1Q9Y6F6 885 aa16.89■□□□□ 0.29
LIG1-202ENST00000427526 JAK2O60674 1132 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 DNAJC2Q99543 621 aaKnown RBP16.88■□□□□ 0.29
LIG1-202ENST00000427526 Q6ZUG5 572 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 FAM200AQ8TCP9 573 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 DACT1Q9NYF0 836 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 TYRO3Q06418 890 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 CAMK4Q16566 473 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 KBTBD3Q8NAB2 608 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 PRDM4Q9UKN5 801 aa16.88■□□□□ 0.29
LIG1-202ENST00000427526 SH3TC1Q8TE82 1336 aa16.87■□□□□ 0.29
LIG1-202ENST00000427526 RESTQ13127 1097 aa16.87■□□□□ 0.29
LIG1-202ENST00000427526 DDX46Q7L014 1031 aaKnown RBP16.87■□□□□ 0.29
LIG1-202ENST00000427526 CCDC191Q8NCU4 936 aa16.87■□□□□ 0.29
LIG1-202ENST00000427526 TEX13AQ9BXU3 409 aaPredicted RBP16.87■□□□□ 0.29
LIG1-202ENST00000427526 BCL9O00512 1426 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 STARD3NLO95772 234 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 PLCB2Q00722 1185 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 ATG9AQ7Z3C6 839 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 PGBD1Q96JS3 809 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 KCNF1Q9H3M0 494 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 DDX19AQ9NUU7 478 aaKnown RBP16.86■□□□□ 0.29
LIG1-202ENST00000427526 FAM13BQ9NYF5 915 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 COL22A1Q8NFW1 1626 aaPredicted RBP16.86■□□□□ 0.29
LIG1-202ENST00000427526 KAT6BQ8WYB5 2073 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 STOX1Q6ZVD7 989 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 C17orf53Q8N3J3 647 aaPredicted RBP16.86■□□□□ 0.29
LIG1-202ENST00000427526 TNMDQ9H2S6 317 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 PALLDQ8WX93 1383 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 MYRIPQ8NFW9 859 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 SMARCC2Q8TAQ2 1214 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 BRF1Q92994 677 aa16.86■□□□□ 0.29
LIG1-202ENST00000427526 SPATA31A1Q5TZJ5 1347 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 A0A0G2JS52 829 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 SCRN1Q12765 414 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 TCIRG1Q13488 830 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 KIAA1524Q8TCG1 905 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 MAP7D2Q96T17 732 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 CLSTN2Q9H4D0 955 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 GOLGA6L4A6NEF3 574 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 TPM3P06753 285 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms