RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MICALL1Q8N3F8 863 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 OR13H1Q8NG92 308 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 NSUN5Q96P11 429 aaKnown RBP7.69□□□□□ -1.18
VPS54-204ENST00000416400 NIF3L1Q9GZT8 377 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 RRAGCQ9HB90 399 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 SLC6A14Q9UN76 642 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 UNCXA6NJT0 531 aa7.68□□□□□ -1.18
VPS54-204ENST00000416400 ZNF16P17020 682 aaPredicted RBP7.68□□□□□ -1.18
VPS54-204ENST00000416400 EIF2AK2P19525 551 aaKnown RBP7.68□□□□□ -1.18
VPS54-204ENST00000416400 MLLT1Q03111 559 aaPredicted RBP7.68□□□□□ -1.18
VPS54-204ENST00000416400 ZNF385CQ66K41 422 aaPredicted RBP7.68□□□□□ -1.18
VPS54-204ENST00000416400 ELMSAN1Q6PJG2 1045 aa7.68□□□□□ -1.18
VPS54-204ENST00000416400 C1orf127Q8N9H9 656 aa7.68□□□□□ -1.18
VPS54-204ENST00000416400 TRPM4Q8TD43 1214 aa7.68□□□□□ -1.18
VPS54-204ENST00000416400 WHAMMQ8TF30 809 aa7.68□□□□□ -1.18
VPS54-204ENST00000416400 LOC102724428A0A0B4J2F2 783 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 CPB1P15086 417 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 SIK1P57059 783 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 ZNF326Q5BKZ1 582 aaKnown RBP7.67□□□□□ -1.18
VPS54-204ENST00000416400 KANK3Q6NY19 840 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 HFE2Q6ZVN8 426 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 BTBD6Q96KE9 485 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 CNTN3Q9P232 1028 aa7.67□□□□□ -1.18
VPS54-204ENST00000416400 FOXD3Q9UJU5 478 aaPredicted RBP7.67□□□□□ -1.18
VPS54-204ENST00000416400 CPNE3O75131 537 aaKnown RBP7.66□□□□□ -1.18
VPS54-204ENST00000416400 COL19A1Q14993 1142 aa7.66□□□□□ -1.18
VPS54-204ENST00000416400 CHSY3Q70JA7 882 aa7.66□□□□□ -1.18
VPS54-204ENST00000416400 ALKBH8Q96BT7 664 aaKnown RBP7.66□□□□□ -1.18
VPS54-204ENST00000416400 MRRFQ96E11 262 aaKnown RBP7.66□□□□□ -1.18
VPS54-204ENST00000416400 KANSL3Q9P2N6 904 aa7.66□□□□□ -1.18
VPS54-204ENST00000416400 FAM177BA6PVY3 158 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 PIK3R2O00459 728 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 GPR182O15218 404 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 RGS9O75916 674 aaPredicted RBP7.65□□□□□ -1.18
VPS54-204ENST00000416400 CYP2E1P05181 493 aaPredicted RBP7.65□□□□□ -1.18
VPS54-204ENST00000416400 EDN3P14138 238 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 MAPK8P45983 427 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 ATP2B2Q01814 1243 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 PODNQ7Z5L7 613 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 DNAJC25Q9H1X3 360 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 ZFYVE28Q9HCC9 887 aa7.65□□□□□ -1.18
VPS54-204ENST00000416400 ZBTB42B2RXF5 422 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 SHISA8B8ZZ34 492 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 J3QW42 95 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 TREHO43280 583 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 HOXD8P13378 290 aaPredicted RBP7.64□□□□□ -1.19
VPS54-204ENST00000416400 EAPPQ56P03 285 aaPredicted RBP7.64□□□□□ -1.19
VPS54-204ENST00000416400 PSAPL1Q6NUJ1 521 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 C1orf229Q6ZS94 237 aaPredicted RBP7.64□□□□□ -1.19
VPS54-204ENST00000416400 FBXO33Q7Z6M2 555 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 CSRNP1Q96S65 589 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 BCL11AQ9H165 835 aa7.64□□□□□ -1.19
VPS54-204ENST00000416400 EIF1AYO14602 144 aaKnown RBP7.63□□□□□ -1.19
VPS54-204ENST00000416400 EREGO14944 169 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 LILRB5O75023 590 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 SMNDC1O75940 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS54-204ENST00000416400 FGD1P98174 961 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 ORC1Q13415 861 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 NUDT8Q8WV74 236 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 SMG9Q9H0W8 520 aaKnown RBP7.63□□□□□ -1.19
VPS54-204ENST00000416400 JPH1Q9HDC5 661 aaPredicted RBP7.63□□□□□ -1.19
VPS54-204ENST00000416400 FRRS1LQ9P0K9 344 aa7.63□□□□□ -1.19
VPS54-204ENST00000416400 M0R082 166 aa7.62□□□□□ -1.19
VPS54-204ENST00000416400 ZNF417Q8TAU3 575 aa7.62□□□□□ -1.19
VPS54-204ENST00000416400 PLD4Q96BZ4 506 aa7.62□□□□□ -1.19
VPS54-204ENST00000416400 ZNF587Q96SQ5 575 aaPredicted RBP7.62□□□□□ -1.19
VPS54-204ENST00000416400 CHRDQ9H2X0 955 aa7.62□□□□□ -1.19
VPS54-204ENST00000416400 KIAA1522Q9P206 1035 aaPredicted RBP7.62□□□□□ -1.19
VPS54-204ENST00000416400 PNMA6FA0A0J9YX94 578 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 ARHGEF15O94989 841 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 KIF4AO95239 1232 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 POLR3DP05423 398 aaPredicted RBP7.61□□□□□ -1.19
VPS54-204ENST00000416400 P4HBP07237 508 aaKnown RBP7.61□□□□□ -1.19
VPS54-204ENST00000416400 FMR1Q06787 632 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS54-204ENST00000416400 PERM1Q5SV97 790 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 MDFIQ99750 246 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 NLRP2Q9NX02 1062 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 SALL4Q9UJQ4 1053 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 MKL2Q9ULH7 1088 aa7.61□□□□□ -1.19
VPS54-204ENST00000416400 ALBP02768 609 aa7.6□□□□□ -1.19
VPS54-204ENST00000416400 DSC3Q14574 896 aa7.6□□□□□ -1.19
VPS54-204ENST00000416400 COL13A1Q5TAT6 717 aaPredicted RBP7.6□□□□□ -1.19
VPS54-204ENST00000416400 CEP135Q66GS9 1140 aa7.6□□□□□ -1.19
VPS54-204ENST00000416400 BEND7Q8N7W2 519 aaPredicted RBP7.6□□□□□ -1.19
VPS54-204ENST00000416400 SCARF2Q96GP6 870 aaPredicted RBP7.6□□□□□ -1.19
VPS54-204ENST00000416400 PPP4R2Q9NY27 417 aa7.6□□□□□ -1.19
VPS54-204ENST00000416400 ADAMTS8Q9UP79 889 aa7.6□□□□□ -1.19
VPS54-204ENST00000416400 GADD45BO75293 160 aaPredicted RBP7.59□□□□□ -1.19
VPS54-204ENST00000416400 TAGLNQ01995 201 aaKnown RBP7.59□□□□□ -1.19
VPS54-204ENST00000416400 ALG1LQ6GMV1 187 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 GALNT12Q8IXK2 581 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 CACTIN-AS1Q8N1I8 211 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 CEP120Q8N960 986 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 CCDC74AQ96AQ1 378 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 OSMRQ99650 979 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 LPIN3Q9BQK8 851 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 PBX4Q9BYU1 374 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 STK17AQ9UEE5 414 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 NAGPAQ9UK23 515 aa7.59□□□□□ -1.19
VPS54-204ENST00000416400 STARD13Q9Y3M8 1113 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms