RNA–Protein interactions for RNA: ENST00000409402.8

SPIRE1-202, Transcript of spire type actin nucleation factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPIRE1, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-202ENST00000409402 CLIP2Q9UDT6 1046 aa28.76■■■□□ 2.2
SPIRE1-202ENST00000409402 PA2G4Q9UQ80 394 aaKnown RBP28.76■■■□□ 2.2
SPIRE1-202ENST00000409402 RMND1Q9NWS8 449 aa28.76■■■□□ 2.19
SPIRE1-202ENST00000409402 LMOD1P29536 600 aaPredicted RBP28.76■■■□□ 2.19
SPIRE1-202ENST00000409402 CPLX3Q8WVH0 158 aa28.76■■■□□ 2.19
SPIRE1-202ENST00000409402 BIN1O00499 593 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 LDHBP07195 334 aaKnown RBP28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CCNL1Q9UK58 526 aaPredicted RBP28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CALM1P0DP23 149 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CALM2P0DP24 149 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CALM3P0DP25 149 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 NAPAP54920 295 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 UBXN4Q92575 508 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CCDC97Q96F63 343 aaPredicted RBP28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 SOS1Q07889 1333 aaPredicted RBP28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 CWF19L2Q2TBE0 894 aaKnown RBP28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 WWC3Q9ULE0 1092 aa28.75■■■□□ 2.19
SPIRE1-202ENST00000409402 A0A1W2PP64 1363 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 TTC41PQ6P2S7 1318 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 RNF113AO15541 343 aaKnown RBP28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 PRC1O43663 620 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 MCM9Q9NXL9 1143 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 HELBQ8NG08 1087 aaPredicted RBP28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 CTNNBL1Q8WYA6 563 aaPredicted RBP28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 GOLGA6L7A0A1B0GV03 622 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 PTPN14Q15678 1187 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 CNBD1Q8NA66 436 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 TNPO1Q92973 898 aaKnown RBP28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 VTI1AQ96AJ9 217 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 KIAA0754O94854 1291 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 GBP3Q9H0R5 595 aa28.74■■■□□ 2.19
SPIRE1-202ENST00000409402 MAP3K19Q56UN5 1328 aa28.73■■■□□ 2.19
SPIRE1-202ENST00000409402 CASQ1P31415 396 aa28.73■■■□□ 2.19
SPIRE1-202ENST00000409402 RTL9Q8NET4 1388 aa28.73■■■□□ 2.19
SPIRE1-202ENST00000409402 RBM27Q9P2N5 1060 aaKnown RBP28.73■■■□□ 2.19
SPIRE1-202ENST00000409402 ESYT1Q9BSJ8 1104 aa28.73■■■□□ 2.19
SPIRE1-202ENST00000409402 KIF4BQ2VIQ3 1234 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 MAGEB6Q8N7X4 407 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 CTNNA2P26232 953 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 TNNI2P48788 182 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 LUZP1Q86V48 1076 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 LRRC2Q9BYS8 371 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 ATP10AO60312 1499 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 UNC13AQ9UPW8 1703 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 MACROD2A1Z1Q3 448 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 PLS1Q14651 629 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 USP37Q86T82 979 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 C6orf50Q9HD87 102 aa28.72■■■□□ 2.19
SPIRE1-202ENST00000409402 SHANK2Q9UPX8 1470 aa28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 TAF3Q5VWG9 929 aa28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 NMIQ13287 307 aaPredicted RBP28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 PARP10Q53GL7 1025 aa28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 CCDC102AQ96A19 550 aa28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 PUF60Q9UHX1 559 aaKnown RBP28.71■■■□□ 2.19
SPIRE1-202ENST00000409402 RRP36Q96EU6 259 aaKnown RBP28.7■■■□□ 2.19
SPIRE1-202ENST00000409402 GDPD2Q9HCC8 539 aa28.7■■■□□ 2.19
SPIRE1-202ENST00000409402 Q6ZUG5 572 aa28.7■■■□□ 2.18
SPIRE1-202ENST00000409402 WDR62O43379 1518 aa28.7■■■□□ 2.18
SPIRE1-202ENST00000409402 PAFAH1B1P43034 410 aa28.7■■■□□ 2.18
SPIRE1-202ENST00000409402 TFCP2Q12800 502 aa28.7■■■□□ 2.18
SPIRE1-202ENST00000409402 NECAB1Q8N987 351 aa28.7■■■□□ 2.18
SPIRE1-202ENST00000409402 CCDC66A2RUB6 948 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 STAT6P42226 847 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 GSTTP1A0A1W2PQM5 241 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 MIGA1Q8NAN2 632 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 TRIM47Q96LD4 638 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 ALS2CR12Q96Q35 445 aa28.69■■■□□ 2.18
SPIRE1-202ENST00000409402 DDX21Q9NR30 783 aaKnown RBP eCLIP28.68■■■□□ 2.18
SPIRE1-202ENST00000409402 SPDYE3A6NKU9 549 aa28.68■■■□□ 2.18
SPIRE1-202ENST00000409402 SYKP43405 635 aa28.68■■■□□ 2.18
SPIRE1-202ENST00000409402 TCOF1Q13428 1488 aaKnown RBP28.68■■■□□ 2.18
SPIRE1-202ENST00000409402 DNA2P51530 1060 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 HOOK3Q86VS8 718 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 CRACR2AQ9BSW2 395 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 DENND2AQ9ULE3 1009 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 UBE2HP62256 183 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 TMX3Q96JJ7 454 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 VAMP4O75379 141 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 PPM1FP49593 454 aaPredicted RBP28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 GSDMDP57764 484 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 KCNG4Q8TDN1 519 aa28.67■■■□□ 2.18
SPIRE1-202ENST00000409402 CCDC172P0C7W6 258 aa28.66■■■□□ 2.18
SPIRE1-202ENST00000409402 PARD3Q8TEW0 1356 aa28.66■■■□□ 2.18
SPIRE1-202ENST00000409402 CCDC91Q7Z6B0 441 aa28.66■■■□□ 2.18
SPIRE1-202ENST00000409402 NEMFO60524 1076 aa28.66■■■□□ 2.18
SPIRE1-202ENST00000409402 ZSCAN22P10073 491 aaPredicted RBP28.66■■■□□ 2.18
SPIRE1-202ENST00000409402 TNNT1P13805 278 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 CALML3P27482 149 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 KIF18AQ8NI77 898 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 MCM3P25205 808 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 TTC6Q86TZ1 520 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 SBNO1A3KN83 1393 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 PLBD2Q8NHP8 589 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 TCEANC2Q96MN5 208 aa28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 BICC1Q9H694 974 aaKnown RBP28.65■■■□□ 2.18
SPIRE1-202ENST00000409402 MAP9Q49MG5 647 aa28.64■■■□□ 2.18
SPIRE1-202ENST00000409402 TMC6Q7Z403 805 aa28.64■■■□□ 2.18
SPIRE1-202ENST00000409402 PHACTR3Q96KR7 559 aa28.64■■■□□ 2.18
SPIRE1-202ENST00000409402 UQCRHLA0A096LP55 91 aa28.64■■■□□ 2.18
SPIRE1-202ENST00000409402 UQCRHP07919 91 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms