RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SBF2Q86WG5 1849 aa22.82■■□□□ 1.24
USP39-202ENST00000409025 LAMB2P55268 1798 aa22.81■■□□□ 1.24
USP39-202ENST00000409025 ADORA1P30542 326 aa22.81■■□□□ 1.24
USP39-202ENST00000409025 NECTIN1Q15223 517 aa22.81■■□□□ 1.24
USP39-202ENST00000409025 PRPF40BQ6NWY9 871 aaKnown RBP22.81■■□□□ 1.24
USP39-202ENST00000409025 RBM8AQ9Y5S9 174 aaKnown RBP22.81■■□□□ 1.24
USP39-202ENST00000409025 CCDC152Q4G0S7 254 aa22.8■■□□□ 1.24
USP39-202ENST00000409025 LRP5O75197 1615 aa22.8■■□□□ 1.24
USP39-202ENST00000409025 ZKSCAN1P17029 563 aaPredicted RBP22.8■■□□□ 1.24
USP39-202ENST00000409025 QTRT2Q9H974 415 aaKnown RBP22.8■■□□□ 1.24
USP39-202ENST00000409025 CWC22Q9HCG8 908 aaKnown RBP22.8■■□□□ 1.24
USP39-202ENST00000409025 LY75O60449 1722 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 ABCC12Q96J65 1359 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 MROH5Q6ZUA9 1318 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 MCMDC2Q4G0Z9 681 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 TMX3Q96JJ7 454 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 SCN7AQ01118 1682 aa22.79■■□□□ 1.24
USP39-202ENST00000409025 PDE8BO95263 885 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 RAB3GAP1Q15042 981 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 ZNF589Q86UQ0 364 aaPredicted RBP22.78■■□□□ 1.24
USP39-202ENST00000409025 VGLL2Q8N8G2 317 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 RTL9Q8NET4 1388 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 GNPATO15228 680 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 RNF20Q5VTR2 975 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 CREB3L3Q68CJ9 461 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 NARFQ9UHQ1 456 aa22.78■■□□□ 1.24
USP39-202ENST00000409025 TAF5LO75529 589 aa22.77■■□□□ 1.24
USP39-202ENST00000409025 MPHOSPH8Q99549 860 aa22.77■■□□□ 1.24
USP39-202ENST00000409025 TM6SF1Q9BZW5 370 aa22.77■■□□□ 1.24
USP39-202ENST00000409025 FKBP4Q02790 459 aaKnown RBP eCLIP22.76■■□□□ 1.23
USP39-202ENST00000409025 LRRFIP1Q32MZ4 808 aaKnown RBP22.76■■□□□ 1.23
USP39-202ENST00000409025 HELLSQ9NRZ9 838 aa22.76■■□□□ 1.23
USP39-202ENST00000409025 RTCBQ9Y3I0 505 aaKnown RBP22.76■■□□□ 1.23
USP39-202ENST00000409025 TAF1LQ8IZX4 1826 aa22.76■■□□□ 1.23
USP39-202ENST00000409025 SLC27A2O14975 620 aa22.75■■□□□ 1.23
USP39-202ENST00000409025 ZPR1O75312 459 aa22.75■■□□□ 1.23
USP39-202ENST00000409025 CASTP20810 708 aaKnown RBP22.75■■□□□ 1.23
USP39-202ENST00000409025 USPL1Q5W0Q7 1092 aa22.75■■□□□ 1.23
USP39-202ENST00000409025 JAKMIP1Q96N16 626 aaKnown RBP22.75■■□□□ 1.23
USP39-202ENST00000409025 BCL11BQ9C0K0 894 aaPredicted RBP22.75■■□□□ 1.23
USP39-202ENST00000409025 SEC31BQ9NQW1 1179 aa22.75■■□□□ 1.23
USP39-202ENST00000409025 SSFA2P28290 1259 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 MCM4P33991 863 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 IGHMBP2P38935 993 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 CUL4AQ13619 759 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 PUM3Q15397 648 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 NOL8Q76FK4 1167 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 TNPO1Q92973 898 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 TTC14Q96N46 770 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 BCL2L12Q9HB09 334 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 HMG20BQ9P0W2 317 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 RNF113AO15541 343 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 NUCB2P80303 420 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 ERFEQ4G0M1 354 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 ZMYM1Q5SVZ6 1142 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 TBC1D9BQ66K14 1250 aa22.74■■□□□ 1.23
USP39-202ENST00000409025 ZNF512BQ96KM6 892 aaPredicted RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 SEC62Q99442 399 aaKnown RBP22.74■■□□□ 1.23
USP39-202ENST00000409025 CHGBP05060 677 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 BICDL1Q6ZP65 573 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 SMIM5Q71RC9 77 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 ZGPATQ8N5A5 531 aaKnown RBP22.73■■□□□ 1.23
USP39-202ENST00000409025 LPIN2Q92539 896 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 ZSWIM6Q9HCJ5 1215 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 CYP46A1Q9Y6A2 500 aa22.73■■□□□ 1.23
USP39-202ENST00000409025 PSMA5P28066 241 aa22.72■■□□□ 1.23
USP39-202ENST00000409025 ADCK5Q3MIX3 580 aa22.72■■□□□ 1.23
USP39-202ENST00000409025 CCDC129Q6ZRS4 1044 aa22.72■■□□□ 1.23
USP39-202ENST00000409025 INTS4Q96HW7 963 aaKnown RBP22.72■■□□□ 1.23
USP39-202ENST00000409025 U3KPZ7 1027 aaPredicted RBP22.72■■□□□ 1.23
USP39-202ENST00000409025 GTF2E1P29083 439 aaPredicted RBP22.72■■□□□ 1.23
USP39-202ENST00000409025 GBP4Q96PP9 640 aa22.72■■□□□ 1.23
USP39-202ENST00000409025 NYXQ9GZU5 481 aa22.72■■□□□ 1.23
USP39-202ENST00000409025 SRP68Q9UHB9 627 aaKnown RBP22.72■■□□□ 1.23
USP39-202ENST00000409025 ZFYP08048 801 aaPredicted RBP22.71■■□□□ 1.23
USP39-202ENST00000409025 FGFR2P21802 821 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 ZAP70P43403 619 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 AK2P54819 239 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 SCARF1Q14162 830 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 VPS53Q5VIR6 699 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 HELBQ8NG08 1087 aaPredicted RBP22.71■■□□□ 1.23
USP39-202ENST00000409025 SETDB2Q96T68 719 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 CDC5LQ99459 802 aaKnown RBP22.71■■□□□ 1.23
USP39-202ENST00000409025 C4BP0C0L5 1744 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 ARAP2Q8WZ64 1704 aa22.71■■□□□ 1.23
USP39-202ENST00000409025 SLC5A1P13866 664 aa22.7■■□□□ 1.23
USP39-202ENST00000409025 TSGA10IPQ3SY00 556 aa22.7■■□□□ 1.23
USP39-202ENST00000409025 RUFY3Q7L099 469 aa22.7■■□□□ 1.23
USP39-202ENST00000409025 PDRG1Q9NUG6 133 aa22.7■■□□□ 1.23
USP39-202ENST00000409025 UQCRFS1P1P0C7P4 283 aa22.7■■□□□ 1.22
USP39-202ENST00000409025 SF3B3Q15393 1217 aaKnown RBP22.7■■□□□ 1.22
USP39-202ENST00000409025 SLC10A5Q5PT55 438 aa22.7■■□□□ 1.22
USP39-202ENST00000409025 FAM196AQ6ZSG2 479 aa22.7■■□□□ 1.22
USP39-202ENST00000409025 ARHGEF1Q92888 912 aaKnown RBP22.7■■□□□ 1.22
USP39-202ENST00000409025 LIMCH1Q9UPQ0 1083 aa22.7■■□□□ 1.22
USP39-202ENST00000409025 RPAP1Q9BWH6 1393 aaPredicted RBP22.69■■□□□ 1.22
USP39-202ENST00000409025 MCAMP43121 646 aa22.69■■□□□ 1.22
USP39-202ENST00000409025 DDX11L8A8MPP1 907 aa22.69■■□□□ 1.22
USP39-202ENST00000409025 CPA1P15085 419 aa22.69■■□□□ 1.22
USP39-202ENST00000409025 CCDC102BQ68D86 513 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms