RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ATP2B3Q16720 1220 aa4.53□□□□□ -1.69
RTN4-208ENST00000404909 DDX46Q7L014 1031 aaKnown RBP4.53□□□□□ -1.69
RTN4-208ENST00000404909 CELF1Q92879 486 aaKnown RBP4.53□□□□□ -1.69
RTN4-208ENST00000404909 DNAJC2Q99543 621 aaKnown RBP4.53□□□□□ -1.69
RTN4-208ENST00000404909 FBXO3Q9UK99 471 aa4.53□□□□□ -1.69
RTN4-208ENST00000404909 AKAP2Q9Y2D5 859 aa4.53□□□□□ -1.69
RTN4-208ENST00000404909 SCN7AQ01118 1682 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 UTRNP46939 3433 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 ADORA1P30542 326 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 CNTROBQ8N137 903 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 PDGFDQ9GZP0 370 aaPredicted RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 C4AP0C0L4 1744 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 AOX1Q06278 1338 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 PDE8BO95263 885 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 RPS8P62241 208 aaKnown RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 RPGRQ92834 1020 aaKnown RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 EDC3Q96F86 508 aaKnown RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 XAGE2Q96GT9 111 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 TNS1Q9HBL0 1735 aaKnown RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 PARP3Q9Y6F1 533 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 MROH5Q6ZUA9 1318 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 ANP32AP39687 249 aaKnown RBP4.52□□□□□ -1.69
RTN4-208ENST00000404909 CHRNDQ07001 517 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 CCDC158Q5M9N0 1113 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 GPR108Q9NPR9 543 aa4.52□□□□□ -1.69
RTN4-208ENST00000404909 MYH3P11055 1940 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 FKBP4Q02790 459 aaKnown RBP eCLIP4.51□□□□□ -1.69
RTN4-208ENST00000404909 PUM3Q15397 648 aaKnown RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 TTC39AQ5SRH9 613 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 SNRKQ9NRH2 765 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 BSDC1Q9NW68 430 aaPredicted RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 RIC1Q4ADV7 1423 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 IFIT1P09914 478 aaKnown RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 ATP5JP18859 108 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 KCNJ4P48050 445 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 VGLL2Q8N8G2 317 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 FSD1Q9BTV5 496 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 RTL9Q8NET4 1388 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 WTIPA6NIX2 430 aaPredicted RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 GOLIM4O00461 696 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 SLC5A1P13866 664 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 CHMLP26374 656 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 CWC27Q6UX04 472 aaKnown RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 CCDC125Q86Z20 511 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 LPIN2Q92539 896 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 EVI5LQ96CN4 794 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 DIAPH3Q9NSV4 1193 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 MINPP1Q9UNW1 487 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 DDX60Q8IY21 1712 aaKnown RBP4.51□□□□□ -1.69
RTN4-208ENST00000404909 ZNF609O15014 1411 aa4.51□□□□□ -1.69
RTN4-208ENST00000404909 PI16Q6UXB8 463 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 SLC51AQ86UW1 340 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 C22orf23Q9BZE7 217 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 ANKIB1Q9P2G1 1089 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 PHKA1P46020 1223 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 GRAPQ13588 217 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 VPS37DQ86XT2 251 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 GRAPLQ8TC17 118 aaPredicted RBP4.5□□□□□ -1.69
RTN4-208ENST00000404909 RBM17Q96I25 401 aaKnown RBP4.5□□□□□ -1.69
RTN4-208ENST00000404909 TAF1P21675 1872 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 BCAMP50895 628 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 SCARF1Q14162 830 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 CCDC102BQ68D86 513 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 ZNF622Q969S3 477 aaKnown RBP eCLIP4.5□□□□□ -1.692e-35■□□□□ 10.6
RTN4-208ENST00000404909 HAUS7Q99871 368 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 BRIP1Q9BX63 1249 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 ANO2Q9NQ90 1003 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 PAG1Q9NWQ8 432 aa4.5□□□□□ -1.69
RTN4-208ENST00000404909 IQSEC3Q9UPP2 1182 aaPredicted RBP4.5□□□□□ -1.69
RTN4-208ENST00000404909 ZBTB7AO95365 584 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 GYG1P46976 350 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 CRY2Q49AN0 593 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 ESYT1Q9BSJ8 1104 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 ANTXR1Q9H6X2 564 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 NSFL1CQ9UNZ2 370 aaKnown RBP4.49□□□□□ -1.69
RTN4-208ENST00000404909 COL4A1P02462 1669 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 COL24A1Q17RW2 1714 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 FRAT2O75474 233 aaPredicted RBP4.49□□□□□ -1.69
RTN4-208ENST00000404909 REC8O95072 547 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 CHGBP05060 677 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 FGFR2P21802 821 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 PDE6BP35913 854 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 MCAMP43121 646 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 ZAP70P43403 619 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 R3HDM1Q15032 1099 aaKnown RBP4.49□□□□□ -1.69
RTN4-208ENST00000404909 FAM227BQ96M60 508 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 TBC1D32Q96NH3 1257 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 IL25Q9H293 177 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 KLRK1P26718 216 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 UPF1Q92900 1129 aaKnown RBP eCLIP4.49□□□□□ -1.698e-30■■□□□ 13.3
RTN4-208ENST00000404909 ANKRD2Q9GZV1 360 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 ATF5Q9Y2D1 282 aaPredicted RBP4.49□□□□□ -1.69
RTN4-208ENST00000404909 TUBGCP6Q96RT7 1819 aa4.49□□□□□ -1.69
RTN4-208ENST00000404909 SRGNP10124 158 aa4.48□□□□□ -1.69
RTN4-208ENST00000404909 CHRNA5P30532 468 aa4.48□□□□□ -1.69
RTN4-208ENST00000404909 NMIQ13287 307 aaPredicted RBP4.48□□□□□ -1.69
RTN4-208ENST00000404909 UBE4AQ14139 1066 aa4.48□□□□□ -1.69
RTN4-208ENST00000404909 SLFNL1Q499Z3 407 aa4.48□□□□□ -1.69
RTN4-208ENST00000404909 CAVIN4Q5BKX8 364 aa4.48□□□□□ -1.69
RTN4-208ENST00000404909 KIAA1211Q6ZU35 1233 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms