RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 RRP7AQ9Y3A4 280 aaKnown RBP12.5□□□□□ -0.41
NEDD9-203ENST00000397378 TAF1P21675 1872 aa12.5□□□□□ -0.41
NEDD9-203ENST00000397378 A0A0C4DFX4 3053 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 RTL9Q8NET4 1388 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 ECE2O60344 883 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 ALDH1A1P00352 501 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 TCIRG1Q13488 830 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 CNGB1Q14028 1251 aaPredicted RBP12.49□□□□□ -0.41
NEDD9-203ENST00000397378 DOK7Q18PE1 504 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 DDX46Q7L014 1031 aaKnown RBP12.49□□□□□ -0.41
NEDD9-203ENST00000397378 ZNF34Q8IZ26 560 aa12.49□□□□□ -0.41
NEDD9-203ENST00000397378 LRRC37AA6NMS7 1700 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 C6orf229H3BNL8 230 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 MYL6BP14649 208 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 GRAPQ13588 217 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 SLC4A8Q2Y0W8 1093 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 PARP10Q53GL7 1025 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 PRAMEF18Q5VWM3 479 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 GRAPLQ8TC17 118 aaPredicted RBP12.48□□□□□ -0.41
NEDD9-203ENST00000397378 PNISRQ8TF01 805 aaKnown RBP12.48□□□□□ -0.41
NEDD9-203ENST00000397378 ERO1AQ96HE7 468 aa12.48□□□□□ -0.41
NEDD9-203ENST00000397378 UTP14AQ9BVJ6 771 aaKnown RBP12.48□□□□□ -0.41
NEDD9-203ENST00000397378 NSFL1CQ9UNZ2 370 aaKnown RBP12.48□□□□□ -0.41
NEDD9-203ENST00000397378 ZNF609O15014 1411 aa12.47□□□□□ -0.41
NEDD9-203ENST00000397378 GIGYF2Q6Y7W6 1299 aaKnown RBP12.47□□□□□ -0.41
NEDD9-203ENST00000397378 CD99L2Q8TCZ2 262 aa12.47□□□□□ -0.41
NEDD9-203ENST00000397378 MIS18AQ9NYP9 233 aa12.47□□□□□ -0.41
NEDD9-203ENST00000397378 ERBB4Q15303 1308 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 PITPNM2Q9BZ72 1349 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 HCLS1P14317 486 aaPredicted RBP12.46□□□□□ -0.41
NEDD9-203ENST00000397378 NF2P35240 595 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 EIF4A1P60842 406 aaKnown RBP12.46□□□□□ -0.41
NEDD9-203ENST00000397378 SLC10A5Q5PT55 438 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 CCER1Q8TC90 406 aaPredicted RBP12.46□□□□□ -0.41
NEDD9-203ENST00000397378 EFCC1Q9HA90 598 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 SCN9AQ15858 1988 aa12.46□□□□□ -0.41
NEDD9-203ENST00000397378 CEP290O15078 2479 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 G3V3G9 751 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 MYCP01106 439 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-203ENST00000397378 VIL1P09327 827 aaKnown RBP12.45□□□□□ -0.42
NEDD9-203ENST00000397378 PPP2R1AP30153 589 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 TMC4Q7Z404 712 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 DPF3Q92784 378 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 ZNF333Q96JL9 665 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 EYA3Q99504 573 aa12.45□□□□□ -0.42
NEDD9-203ENST00000397378 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-203ENST00000397378 CUL9Q8IWT3 2517 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 ZNF280AP59817 542 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-203ENST00000397378 PTPN12Q05209 780 aaKnown RBP12.44□□□□□ -0.42
NEDD9-203ENST00000397378 PRKG1Q13976 671 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 SLC9C1Q4G0N8 1177 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 SPRYD7Q5W111 196 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 NBPF11Q86T75 865 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 IFNL1Q8IU54 200 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 MYOZ2Q9NPC6 264 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 POLLQ9UGP5 575 aa12.44□□□□□ -0.42
NEDD9-203ENST00000397378 RANBP2P49792 3224 aaKnown RBP12.43□□□□□ -0.42
NEDD9-203ENST00000397378 MANSC4A6NHS7 340 aaPredicted RBP12.43□□□□□ -0.42
NEDD9-203ENST00000397378 ARMC9Q7Z3E5 817 aa12.43□□□□□ -0.42
NEDD9-203ENST00000397378 NEFMP07197 916 aa12.42□□□□□ -0.42
NEDD9-203ENST00000397378 INHBEP58166 350 aa12.42□□□□□ -0.42
NEDD9-203ENST00000397378 GPSM2P81274 684 aa12.42□□□□□ -0.42
NEDD9-203ENST00000397378 RSBN1LQ6PCB5 846 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-203ENST00000397378 LRP10Q7Z4F1 713 aa12.42□□□□□ -0.42
NEDD9-203ENST00000397378 ZC3H12CQ9C0D7 883 aaKnown RBP12.42□□□□□ -0.42
NEDD9-203ENST00000397378 IGF2BP3O00425 579 aaKnown RBP eCLIP12.41□□□□□ -0.42
NEDD9-203ENST00000397378 USP17L8P0C7I0 530 aa12.41□□□□□ -0.42
NEDD9-203ENST00000397378 SP3Q02447 781 aa12.41□□□□□ -0.42
NEDD9-203ENST00000397378 AGBL3Q8NEM8 1001 aa12.41□□□□□ -0.42
NEDD9-203ENST00000397378 PSME4Q14997 1843 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 CRHR2Q13324 411 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 PDIA6Q15084 440 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 CELF1Q92879 486 aaKnown RBP12.4□□□□□ -0.42
NEDD9-203ENST00000397378 LRCH3Q96II8 777 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 PLEKHF1Q96S99 279 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 COL25A1Q9BXS0 654 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-203ENST00000397378 TRMT112Q9UI30 125 aaKnown RBP12.4□□□□□ -0.42
NEDD9-203ENST00000397378 ANGEL1Q9UNK9 670 aaKnown RBP12.4□□□□□ -0.42
NEDD9-203ENST00000397378 PTCH2Q9Y6C5 1203 aa12.4□□□□□ -0.42
NEDD9-203ENST00000397378 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-203ENST00000397378 SOX1O00570 391 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-203ENST00000397378 NFE2L2Q16236 605 aa12.39□□□□□ -0.43
NEDD9-203ENST00000397378 NBPF9Q3BBW0 867 aa12.39□□□□□ -0.43
NEDD9-203ENST00000397378 HSP90AB3PQ58FF7 597 aa12.39□□□□□ -0.43
NEDD9-203ENST00000397378 TBC1D16Q8TBP0 767 aa12.39□□□□□ -0.43
NEDD9-203ENST00000397378 SLC10A4Q96EP9 437 aa12.39□□□□□ -0.43
NEDD9-203ENST00000397378 SH3TC1Q8TE82 1336 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 LAMB1P07942 1786 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 CAP1Q01518 475 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 OTUD7BQ6GQQ9 843 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 NLRP10Q86W26 655 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 NECTIN2Q92692 538 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 ZNF428Q96B54 188 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 THUMPD2Q9BTF0 503 aaKnown RBP12.38□□□□□ -0.43
NEDD9-203ENST00000397378 PRO3102Q9H379 93 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 FZD1Q9UP38 647 aa12.38□□□□□ -0.43
NEDD9-203ENST00000397378 UNC80Q8N2C7 3258 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 UFL1O94874 794 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 ZBTB48P10074 688 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms