RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PSMA7O14818 248 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 PLCG2P16885 1265 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 HOMER2Q9NSB8 354 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 PRPF4BQ13523 1007 aaKnown RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 FBXO31Q5XUX0 539 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 ALG1Q9BT22 464 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 CHPF2Q9P2E5 772 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TRPM2O94759 1503 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 SPDYE3A6NKU9 549 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 NCBP1Q09161 790 aaKnown RBP6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ZNF804AQ7Z570 1209 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ATP2B3Q16720 1220 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 GRIPAP1Q4V328 841 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 SDSP20132 328 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 SSFA2P28290 1259 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 CPLX3Q8WVH0 158 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 SPDYE4A6NLX3 237 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 N4BP3O15049 544 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ATP6V1AP38606 617 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 CEP135Q66GS9 1140 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ATL3Q6DD88 541 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC155Q8N6L0 562 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 BICD1Q96G01 975 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 TMX3Q96JJ7 454 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 MYO5CQ9NQX4 1742 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ERICH4A6NGS2 130 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 DYNC1I1O14576 645 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ALDH1L1O75891 902 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 KSR2Q6VAB6 950 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 TRMT1Q9NXH9 659 aaKnown RBP6.22□□□□□ -1.41
VPS13C-204ENST00000395898 HSF2BPO75031 334 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 FERP16591 822 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 CHMP4BP1P59074 171 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 PLCH2O75038 1416 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 PABPN1LA6NDY0 278 aaKnown RBP6.22□□□□□ -1.41
VPS13C-204ENST00000395898 KIF4AO95239 1232 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ZNF622Q969S3 477 aaKnown RBP eCLIP6.22□□□□□ -1.412e-6■■□□□ 14.2
VPS13C-204ENST00000395898 BICDL2A1A5D9 508 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 NAA16Q6N069 864 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-204ENST00000395898 ANKRD44Q8N8A2 993 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 IMPG2Q9BZV3 1241 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 C6orf50Q9HD87 102 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 WDR7Q9Y4E6 1490 aa6.22□□□□□ -1.41
VPS13C-204ENST00000395898 PDE1AP54750 535 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 ESYT1Q9BSJ8 1104 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 KLF18A0A0U1RQI7 1052 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 BIN1O00499 593 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 GNA11P29992 359 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 HAND2P61296 217 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 LMAN1P49257 510 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 BMS1Q14692 1282 aaKnown RBP6.21□□□□□ -1.41
VPS13C-204ENST00000395898 ZSCAN23Q3MJ62 389 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 C6orf163Q5TEZ5 329 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 SNX21Q969T3 373 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 CFAP74Q9C0B2 1584 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 PAG1Q9NWQ8 432 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 SLC4A4Q9Y6R1 1079 aa6.21□□□□□ -1.41
VPS13C-204ENST00000395898 CTAGE9A4FU28 777 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 CYP7A1P22680 504 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 UBE4AQ14139 1066 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 GIMAP7Q8NHV1 300 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 SYNCQ9H7C4 482 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 SSX2IPQ9Y2D8 614 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 FLT4P35916 1363 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 STMN4Q9H169 189 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 ARFGAP3Q9NP61 516 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 RTL9Q8NET4 1388 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 POLR3GO15318 223 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 KRT13P13646 458 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 IBSPP21815 317 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 KRT83P78385 493 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 LMBR1Q8WVP7 490 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 SPAG5Q96R06 1193 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 COMMD10Q9Y6G5 202 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 PPP1R2P41236 205 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 TPTE2Q6XPS3 522 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 RASAL2Q9UJF2 1139 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 DNMT1P26358 1616 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 PRAG1Q86YV5 1406 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 FAM83GA6ND36 823 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 SRRTQ9BXP5 876 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 RBM28Q9NW13 759 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 RBM8AQ9Y5S9 174 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 KRT86O43790 486 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 TOM1O60784 492 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 COPS6Q7L5N1 327 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 CEP112Q8N8E3 955 aa6.21□□□□□ -1.42
VPS13C-204ENST00000395898 ZC3H12CQ9C0D7 883 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 PUF60Q9UHX1 559 aaKnown RBP6.21□□□□□ -1.42
VPS13C-204ENST00000395898 KIAA0556O60303 1618 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 MEIS3Q99687 375 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 GDPD2Q9HCC8 539 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ARHGEF12Q9NZN5 1544 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 MAGEB6P1A0A0J9YX57 407 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 DNA2P51530 1060 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 SLC9C2Q5TAH2 1124 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ISM2Q6H9L7 571 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 CERS3Q8IU89 383 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ATP2A1O14983 1001 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 GNG11P61952 73 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms