RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TSGA10IPQ3SY00 556 aa24.38■■□□□ 1.49
CLK3-202ENST00000395066 BICD2Q8TD16 824 aa24.38■■□□□ 1.49
CLK3-202ENST00000395066 SCN11AQ9UI33 1791 aa24.38■■□□□ 1.49
CLK3-202ENST00000395066 IFNL2Q8IZJ0 200 aa24.37■■□□□ 1.49
CLK3-202ENST00000395066 KIAA1524Q8TCG1 905 aa24.37■■□□□ 1.49
CLK3-202ENST00000395066 SCAND2PQ9GZW5 306 aaPredicted RBP24.37■■□□□ 1.49
CLK3-202ENST00000395066 CBX8Q9HC52 389 aa24.37■■□□□ 1.49
CLK3-202ENST00000395066 AFDNP55196 1824 aaKnown RBP24.36■■□□□ 1.49
CLK3-202ENST00000395066 TPM3P06753 285 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 PTGS1P23219 599 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 TIMM10P62072 90 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 FGD1P98174 961 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 SCRN1Q12765 414 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 GOLIM4O00461 696 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 RABL6Q3YEC7 729 aaPredicted RBP24.36■■□□□ 1.49
CLK3-202ENST00000395066 MCMDC2Q4G0Z9 681 aa24.36■■□□□ 1.49
CLK3-202ENST00000395066 ALDH8A1Q9H2A2 487 aaPredicted RBP24.36■■□□□ 1.49
CLK3-202ENST00000395066 H3BQV1 296 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 IFFO2Q5TF58 517 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 PRDM10Q9NQV6 1147 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 RESTQ13127 1097 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 CHST3Q7LGC8 479 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 HAUS7Q99871 368 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 C1orf167Q5SNV9 1468 aa24.35■■□□□ 1.49
CLK3-202ENST00000395066 FMNL2Q96PY5 1086 aa24.34■■□□□ 1.49
CLK3-202ENST00000395066 NAP1L2Q9ULW6 460 aaPredicted RBP24.34■■□□□ 1.49
CLK3-202ENST00000395066 ZNF594Q96JF6 807 aaPredicted RBP24.34■■□□□ 1.49
CLK3-202ENST00000395066 NRBP1Q9UHY1 535 aa24.34■■□□□ 1.49
CLK3-202ENST00000395066 CASP7P55210 303 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 CCT2P78371 535 aaKnown RBP24.33■■□□□ 1.49
CLK3-202ENST00000395066 APOBRQ0VD83 1088 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 KRT32Q14532 448 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 DNAJC25Q9H1X3 360 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 A0A087WWV3 80 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 GOLGA6L6A8MZA4 724 aa24.33■■□□□ 1.49
CLK3-202ENST00000395066 U3KPZ7 1027 aaPredicted RBP24.33■■□□□ 1.49
CLK3-202ENST00000395066 LRMPQ12912 555 aa24.32■■□□□ 1.48
CLK3-202ENST00000395066 TTLL7Q6ZT98 887 aa24.32■■□□□ 1.48
CLK3-202ENST00000395066 CLSTN2Q9H4D0 955 aa24.32■■□□□ 1.48
CLK3-202ENST00000395066 BCL2L12Q9HB09 334 aa24.32■■□□□ 1.48
CLK3-202ENST00000395066 NCOA5Q9HCD5 579 aaKnown RBP24.32■■□□□ 1.48
CLK3-202ENST00000395066 CABP4P57796 275 aa24.32■■□□□ 1.48
CLK3-202ENST00000395066 NBPF26B4DH59 902 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 NBPF14Q5TI25 921 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 NBPF10Q6P3W6 841 aaKnown RBP24.31■■□□□ 1.48
CLK3-202ENST00000395066 NBPF15Q8N660 670 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 GUCY1B3Q02153 619 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 CHAF1AQ13111 956 aaPredicted RBP24.31■■□□□ 1.48
CLK3-202ENST00000395066 KBTBD3Q8NAB2 608 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 DCAF5Q96JK2 942 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 FOXO4P98177 505 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 LRRC24Q50LG9 513 aa24.31■■□□□ 1.48
CLK3-202ENST00000395066 ARFGEF2Q9Y6D5 1785 aa24.3■■□□□ 1.48
CLK3-202ENST00000395066 CTDNEP1O95476 244 aa24.3■■□□□ 1.48
CLK3-202ENST00000395066 ATG9AQ7Z3C6 839 aa24.3■■□□□ 1.48
CLK3-202ENST00000395066 CCDC186Q7Z3E2 898 aa24.3■■□□□ 1.48
CLK3-202ENST00000395066 DRC7Q8IY82 874 aa24.3■■□□□ 1.48
CLK3-202ENST00000395066 DDX19AQ9NUU7 478 aaKnown RBP24.3■■□□□ 1.48
CLK3-202ENST00000395066 PAG1Q9NWQ8 432 aa24.29■■□□□ 1.48
CLK3-202ENST00000395066 PPP4R3BQ5MIZ7 849 aa24.29■■□□□ 1.48
CLK3-202ENST00000395066 PLBD2Q8NHP8 589 aa24.29■■□□□ 1.48
CLK3-202ENST00000395066 TRIM5Q9C035 493 aa24.29■■□□□ 1.48
CLK3-202ENST00000395066 ZBTB3Q9H5J0 574 aa24.29■■□□□ 1.48
CLK3-202ENST00000395066 NSUN7Q8NE18 718 aaKnown RBP24.28■■□□□ 1.48
CLK3-202ENST00000395066 RIOK3O14730 519 aaKnown RBP24.28■■□□□ 1.48
CLK3-202ENST00000395066 A1BGP04217 495 aa24.28■■□□□ 1.48
CLK3-202ENST00000395066 ZNF165P49910 485 aa24.28■■□□□ 1.48
CLK3-202ENST00000395066 ZNF142P52746 1687 aaPredicted RBP24.28■■□□□ 1.48
CLK3-202ENST00000395066 TTLL5Q6EMB2 1281 aa24.28■■□□□ 1.48
CLK3-202ENST00000395066 PTPDC1A2A3K4 754 aa24.27■■□□□ 1.48
CLK3-202ENST00000395066 ERCC4Q92889 916 aaPredicted RBP24.27■■□□□ 1.48
CLK3-202ENST00000395066 C19orf44Q9H6X5 657 aa24.27■■□□□ 1.48
CLK3-202ENST00000395066 GPHNQ9NQX3 736 aaPredicted RBP24.27■■□□□ 1.48
CLK3-202ENST00000395066 PDIA4P13667 645 aaKnown RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 DMTNQ08495 405 aa24.26■■□□□ 1.47
CLK3-202ENST00000395066 RBM43Q6ZSC3 357 aaKnown RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 PUS3Q9BZE2 481 aaKnown RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 LAMA4Q16363 1823 aa24.26■■□□□ 1.47
CLK3-202ENST00000395066 ZSCAN20P17040 1043 aaPredicted RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 ADD1P35611 737 aaKnown RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 CBX1P83916 185 aa24.26■■□□□ 1.47
CLK3-202ENST00000395066 DHX32Q7L7V1 743 aaKnown RBP24.26■■□□□ 1.47
CLK3-202ENST00000395066 GOLPH3LQ9H4A5 285 aa24.26■■□□□ 1.47
CLK3-202ENST00000395066 UTP14CQ5TAP6 766 aaKnown RBP24.25■■□□□ 1.47
CLK3-202ENST00000395066 SMARCC2Q8TAQ2 1214 aa24.25■■□□□ 1.47
CLK3-202ENST00000395066 CCDC85AQ96PX6 553 aaPredicted RBP24.25■■□□□ 1.47
CLK3-202ENST00000395066 ALS2Q96Q42 1657 aa24.25■■□□□ 1.47
CLK3-202ENST00000395066 PFKFB2O60825 505 aa24.25■■□□□ 1.47
CLK3-202ENST00000395066 FBXW7Q969H0 707 aa24.25■■□□□ 1.47
CLK3-202ENST00000395066 LMTK3Q96Q04 1460 aa24.25■■□□□ 1.47
CLK3-202ENST00000395066 SH3TC1Q8TE82 1336 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 HSP90AB3PQ58FF7 597 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 C11orf57Q6ZUT1 292 aaPredicted RBP24.24■■□□□ 1.47
CLK3-202ENST00000395066 PDCL2Q8N4E4 241 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 E7EWF7 191 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 HSPD1P10809 573 aaKnown RBP24.24■■□□□ 1.47
CLK3-202ENST00000395066 ZNF75DP51815 510 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 ATP2B3Q16720 1220 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 USP28Q96RU2 1077 aa24.24■■□□□ 1.47
CLK3-202ENST00000395066 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms