RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NME9Q86XW9 330 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 GPATCH11Q8N954 259 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 ALG1Q9BT22 464 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 TBC1D2Q9BYX2 928 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 AFMP43652 599 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 ATP2A2P16615 1042 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 KRT83P78385 493 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 VTI1AQ96AJ9 217 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 C6orf50Q9HD87 102 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 TTC16Q8NEE8 873 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 ARFGAP3Q9NP61 516 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 KLF18A0A0U1RQI7 1052 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 SNRPA1P09661 255 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 NBPF6Q5VWK0 638 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 NBPF5PQ86XG9 351 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 NBPF4Q96M43 638 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 TUBB4AP04350 444 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 PSMC4P43686 418 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 RTL9Q8NET4 1388 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 CEP83Q9Y592 693 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 BICDL2A1A5D9 508 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 FAM13AO94988 1023 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 SMARCC2Q8TAQ2 1214 aa14.53□□□□□ -0.08
CCDC88C-204ENST00000389857 GDPD2Q9HCC8 539 aa14.52□□□□□ -0.08
CCDC88C-204ENST00000389857 SNX16P57768 344 aa14.52□□□□□ -0.08
CCDC88C-204ENST00000389857 UBE3BQ7Z3V4 1068 aa14.52□□□□□ -0.08
CCDC88C-204ENST00000389857 SLC4A4Q9Y6R1 1079 aa14.52□□□□□ -0.08
CCDC88C-204ENST00000389857 EEF2P13639 858 aaKnown RBP14.52□□□□□ -0.08
CCDC88C-204ENST00000389857 WASLO00401 505 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 NOL3O60936 208 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 CCDC50Q8IVM0 306 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 ZSWIM4Q9H7M6 989 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 ZSCAN23Q3MJ62 389 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 FMNL3Q8IVF7 1028 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 SNRKQ9NRH2 765 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 NCAPD3P42695 1498 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 TRIM27P14373 513 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 JAKMIP2Q96AA8 810 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 TXNDC16Q9P2K2 825 aa14.52□□□□□ -0.09
CCDC88C-204ENST00000389857 CALM1P0DP23 149 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 CALM2P0DP24 149 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 CALM3P0DP25 149 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 CYP7A1P22680 504 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 MNAT1P51948 309 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 NAPAP54920 295 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 ZBTB16Q05516 673 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 ZNF804AQ7Z570 1209 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 RBM27Q9P2N5 1060 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 GAS8O95995 478 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 NAP1L3Q99457 506 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 ASIC1P78348 528 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 SRRTQ9BXP5 876 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 TMEM110-MUSTN1A8MSY1 372 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 KRT222Q8N1A0 295 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 ANO6Q4KMQ2 910 aa14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 IPO4Q8TEX9 1081 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-204ENST00000389857 ATP5J2-PTCD1G3V325 749 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 ATP2C2O75185 946 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 SPDYE3A6NKU9 549 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 CFAP58Q5T655 872 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 OGFOD1Q8N543 542 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 TSGA10Q9BZW7 698 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 KRT86O43790 486 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 ALDH3A1P30838 453 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 RRP36Q96EU6 259 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 SYNJ1O43426 1573 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 TOP2BQ02880 1626 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 CALML3P27482 149 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 ANKRD24Q8TF21 1146 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 CCDC160A6NGH7 325 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 KLHL40Q2TBA0 621 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 RAB11FIP4Q86YS3 637 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 MRPS27Q92552 414 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 IL16Q14005 1332 aa14.5□□□□□ -0.09
CCDC88C-204ENST00000389857 TPD52P55327 224 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 KRT28Q7Z3Y7 464 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 GNAT2P19087 354 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 KIF5AQ12840 1032 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 MCMDC2Q4G0Z9 681 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 GOLGA1Q92805 767 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 SETDB2Q96T68 719 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 NEK11Q8NG66 645 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 EMILIN1Q9Y6C2 1016 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 KRT2P35908 639 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 MAK16Q9BXY0 300 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 SELENOSQ9BQE4 189 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 AMOTL2Q9Y2J4 779 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 NCOA1Q15788 1441 aa14.49□□□□□ -0.09
CCDC88C-204ENST00000389857 MKRN1Q9UHC7 482 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 GJC1P36383 396 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 NAA16Q6N069 864 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 CCDC117Q8IWD4 279 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 TRERF1Q96PN7 1200 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 NYXQ9GZU5 481 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 GMNNO75496 209 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 GIMAP6Q6P9H5 292 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 CCDC121Q6ZUS5 278 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 TCHPQ9BT92 498 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 ANKRD13DQ6ZTN6 518 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 SMC1BQ8NDV3 1235 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms