RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 NECAB1Q8N987 351 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 SPATA17Q96L03 361 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 RIOK3O14730 519 aaKnown RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 MCM3P25205 808 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 SETDB2Q96T68 719 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 ORC3Q9UBD5 711 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 IFRD2Q12894 506 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 TSTA3Q13630 321 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 FOXD4Q12950 439 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 UBE3BQ7Z3V4 1068 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 SPDYE16A6NNV3 312 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 E7EVH7 732 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 MCM6Q14566 821 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 SPDYE2Q495Y8 402 aa14.13□□□□□ -0.15
CHD3-203ENST00000380358 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
CHD3-203ENST00000380358 DYNC1I1O14576 645 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 CCDC89Q8N998 374 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 SEC62Q99442 399 aaKnown RBP14.12□□□□□ -0.15
CHD3-203ENST00000380358 CRNKL1Q9BZJ0 848 aaKnown RBP14.12□□□□□ -0.15
CHD3-203ENST00000380358 ASIC1P78348 528 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 CCDC183Q5T5S1 534 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 ANKFY1Q9P2R3 1169 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 GLRX3O76003 335 aaKnown RBP14.12□□□□□ -0.15
CHD3-203ENST00000380358 RAPGEF1Q13905 1077 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 SNW1Q13573 536 aaKnown RBP14.12□□□□□ -0.15
CHD3-203ENST00000380358 FAM114A1Q8IWE2 563 aa14.12□□□□□ -0.15
CHD3-203ENST00000380358 GPHNQ9NQX3 736 aaPredicted RBP14.12□□□□□ -0.15
CHD3-203ENST00000380358 MIGA1Q8NAN2 632 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 CCDC7Q96M83 1385 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 GAS8O95995 478 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 RXRAP19793 462 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 TNNI2P48788 182 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 PPP1R7Q15435 360 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 RNF169Q8NCN4 708 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 NUDT16Q96DE0 195 aaKnown RBP14.11□□□□□ -0.15
CHD3-203ENST00000380358 PDE1CQ14123 709 aaPredicted RBP14.11□□□□□ -0.15
CHD3-203ENST00000380358 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.11□□□□□ -0.15
CHD3-203ENST00000380358 V9GYY5 206 aaPredicted RBP14.11□□□□□ -0.15
CHD3-203ENST00000380358 UBAP1LF5GYI3 381 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 SSFA2P28290 1259 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 CEP57Q86XR8 500 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 PPP4R3BQ5MIZ7 849 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 MSL1Q68DK7 614 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 FMNL3Q8IVF7 1028 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 ERMNQ8TAM6 284 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 RSPH14Q9UHP6 348 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 ZEB2O60315 1214 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 WTAPQ15007 396 aa14.11□□□□□ -0.15
CHD3-203ENST00000380358 MKRN1Q9UHC7 482 aaKnown RBP14.11□□□□□ -0.15
CHD3-203ENST00000380358 STX17P56962 302 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 HELBQ8NG08 1087 aaPredicted RBP14.1□□□□□ -0.15
CHD3-203ENST00000380358 POLD1P28340 1107 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 PPP1R42Q7Z4L9 355 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 SPDYE3A6NKU9 549 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 LDHCP07864 332 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 MCM7P33993 719 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 CCDC170Q8IYT3 715 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 DHX58Q96C10 678 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 FEZ2Q9UHY8 353 aaPredicted RBP14.1□□□□□ -0.15
CHD3-203ENST00000380358 BIRC3Q13489 604 aa14.1□□□□□ -0.15
CHD3-203ENST00000380358 NAIPQ13075 1403 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 HSPA4P34932 840 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 JDP2Q8WYK2 163 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 TRIM7Q9C029 511 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 ATP6V0A2Q9Y487 856 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 TACC3Q9Y6A5 838 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 CEBPAP49715 358 aaPredicted RBP14.09□□□□□ -0.15
CHD3-203ENST00000380358 SELENOOQ9BVL4 669 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 CCDC169A6NNP5 214 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 GTPBP4Q9BZE4 634 aaKnown RBP14.09□□□□□ -0.15
CHD3-203ENST00000380358 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.09□□□□□ -0.153e-20■■■□□ 17.1
CHD3-203ENST00000380358 C6orf50Q9HD87 102 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 KIF5AQ12840 1032 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 GIMAP6Q6P9H5 292 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 ZKSCAN3Q9BRR0 538 aa14.09□□□□□ -0.15
CHD3-203ENST00000380358 FCHSD2O94868 740 aa14.08□□□□□ -0.15
CHD3-203ENST00000380358 GSDMBQ8TAX9 411 aa14.08□□□□□ -0.15
CHD3-203ENST00000380358 RASAL2Q9UJF2 1139 aa14.08□□□□□ -0.15
CHD3-203ENST00000380358 MYCLP12524 364 aaPredicted RBP14.08□□□□□ -0.16
CHD3-203ENST00000380358 UBASH3AP57075 661 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 RABEP2Q9H5N1 569 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 MAN1A1P33908 653 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 NSFL1CQ9UNZ2 370 aaKnown RBP14.08□□□□□ -0.16
CHD3-203ENST00000380358 BZW2Q9Y6E2 419 aaKnown RBP14.08□□□□□ -0.16
CHD3-203ENST00000380358 KLF18A0A0U1RQI7 1052 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 LPXNO60711 386 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 KARSQ15046 597 aaKnown RBP14.08□□□□□ -0.16
CHD3-203ENST00000380358 IRAK4Q9NWZ3 460 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 ADCY5O95622 1261 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 VPS52Q8N1B4 723 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 ZNF710Q8N1W2 664 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 IFI16Q16666 785 aaKnown RBP14.08□□□□□ -0.16
CHD3-203ENST00000380358 CHMP6Q96FZ7 201 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 FAM184BQ9ULE4 1060 aa14.08□□□□□ -0.16
CHD3-203ENST00000380358 CNGA1P29973 690 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 MCM4P33991 863 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 SEPT6Q14141 434 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 FAM47CQ5HY64 1035 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 BSPRYQ5W0U4 402 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 FCHSD1Q86WN1 690 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms