RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FERMT3Q86UX7 667 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 TRIM44Q96DX7 344 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-202ENST00000378839 RFX7Q2KHR2 1363 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 PALLDQ8WX93 1383 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 JAK2O60674 1132 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 GLIPR1L2Q4G1C9 344 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 HMG20BQ9P0W2 317 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 HSP90AA2PQ14568 343 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-202ENST00000378839 GPR108Q9NPR9 543 aa15.95■□□□□ 0.14
CCDC3-202ENST00000378839 SH3TC1Q8TE82 1336 aa15.94■□□□□ 0.14
CCDC3-202ENST00000378839 SCARF1Q14162 830 aa15.94■□□□□ 0.14
CCDC3-202ENST00000378839 NEK1Q96PY6 1258 aa15.94■□□□□ 0.14
CCDC3-202ENST00000378839 LARP1BQ659C4 914 aaKnown RBP15.94■□□□□ 0.14
CCDC3-202ENST00000378839 Q6ZUG5 572 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 ITGB4P16144 1822 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 M0R2C6 588 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 FOXP2O15409 715 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 CIAO1O76071 339 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 UBE2HP62256 183 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 ZMYM1Q5SVZ6 1142 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 TSPY26PQ9H489 355 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 LAMA4Q16363 1823 aa15.93■□□□□ 0.14
CCDC3-202ENST00000378839 U3KPZ7 1027 aaPredicted RBP15.92■□□□□ 0.14
CCDC3-202ENST00000378839 MAST3O60307 1309 aa15.92■□□□□ 0.14
CCDC3-202ENST00000378839 PI16Q6UXB8 463 aa15.92■□□□□ 0.14
CCDC3-202ENST00000378839 TTC6Q86TZ1 520 aa15.92■□□□□ 0.14
CCDC3-202ENST00000378839 DISP2A7MBM2 1401 aa15.92■□□□□ 0.14
CCDC3-202ENST00000378839 IFIT1P09914 478 aaKnown RBP15.91■□□□□ 0.14
CCDC3-202ENST00000378839 GPTP24298 496 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 TTLL5Q6EMB2 1281 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 CSF1RP07333 972 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 HSPD1P10809 573 aaKnown RBP15.91■□□□□ 0.14
CCDC3-202ENST00000378839 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
CCDC3-202ENST00000378839 GTF3C6Q969F1 213 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 OSBP2Q969R2 916 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 ANKRD1Q15327 319 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 CCDC183Q5T5S1 534 aa15.91■□□□□ 0.14
CCDC3-202ENST00000378839 SCRN1Q12765 414 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 XAGE2Q96GT9 111 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 HELLSQ9NRZ9 838 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 PCCAP05165 728 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-202ENST00000378839 BRF1Q92994 677 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 FUCA2Q9BTY2 467 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 RIC1Q4ADV7 1423 aa15.9■□□□□ 0.14
CCDC3-202ENST00000378839 CYP19A1P11511 503 aaPredicted RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 CCDC57Q2TAC2 916 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 HSP90AB3PQ58FF7 597 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 GIMAP6Q6P9H5 292 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 ZBTB38Q8NAP3 1195 aaPredicted RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 DDX11Q96FC9 970 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 RNF113AO15541 343 aaKnown RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 CTDNEP1O95476 244 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 FKBP4Q02790 459 aaKnown RBP eCLIP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 KRT32Q14532 448 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 CHST3Q7LGC8 479 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 ZSCAN30Q86W11 494 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 TFIP11Q9UBB9 837 aaKnown RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 MAP3K15Q6ZN16 1313 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 BCL9O00512 1426 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 SLIT2O94813 1529 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 PPFIA3O75145 1194 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 EXOSC10Q01780 885 aaKnown RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 NLRP10Q86W26 655 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 ANP32BQ92688 251 aaKnown RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 SYAP1Q96A49 352 aaPredicted RBP15.89■□□□□ 0.13
CCDC3-202ENST00000378839 PLA2G12BQ9BX93 195 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 GREM2Q9H772 168 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 NWD2Q9ULI1 1742 aa15.89■□□□□ 0.13
CCDC3-202ENST00000378839 GIGYF2Q6Y7W6 1299 aaKnown RBP15.88■□□□□ 0.13
CCDC3-202ENST00000378839 CEP126Q9P2H0 1117 aa15.88■□□□□ 0.13
CCDC3-202ENST00000378839 ZBTB1Q9Y2K1 713 aa15.88■□□□□ 0.13
CCDC3-202ENST00000378839 ATP6V1DQ9Y5K8 247 aa15.88■□□□□ 0.13
CCDC3-202ENST00000378839 DSCC1Q9BVC3 393 aa15.88■□□□□ 0.13
CCDC3-202ENST00000378839 GPHNQ9NQX3 736 aaPredicted RBP15.88■□□□□ 0.13
CCDC3-202ENST00000378839 E7EWF7 191 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 APOBRQ0VD83 1088 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 RIPOR2Q9Y4F9 1068 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 LRP6O75581 1613 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 HCLS1P14317 486 aaPredicted RBP15.87■□□□□ 0.13
CCDC3-202ENST00000378839 LIG1P18858 919 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 ZAP70P43403 619 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 KIF6Q6ZMV9 814 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 TTLL11Q8NHH1 800 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 NKX2-3Q8TAU0 364 aa15.87■□□□□ 0.13
CCDC3-202ENST00000378839 COL16A1Q07092 1604 aaPredicted RBP15.86■□□□□ 0.13
CCDC3-202ENST00000378839 DHX32Q7L7V1 743 aaKnown RBP15.86■□□□□ 0.13
CCDC3-202ENST00000378839 PUS7LQ9H0K6 701 aaKnown RBP15.86■□□□□ 0.13
CCDC3-202ENST00000378839 NCOA5Q9HCD5 579 aaKnown RBP15.86■□□□□ 0.13
CCDC3-202ENST00000378839 AP5Z1O43299 807 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 STARD3NLO95772 234 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 AGXT2Q9BYV1 514 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 NOL7Q9UMY1 257 aaKnown RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 UBN2Q6ZU65 1347 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 HSP90B1P14625 803 aaKnown RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 ITGA6P23229 1130 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 RESTQ13127 1097 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 MPNDQ8N594 471 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 SMARCC2Q8TAQ2 1214 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 PFKFB2O60825 505 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms