RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 USP19O94966 1318 aa17.33■□□□□ 0.37
NPHP4-201ENST00000378156 KLF18A0A0U1RQI7 1052 aa17.33■□□□□ 0.37
NPHP4-201ENST00000378156 IRS4O14654 1257 aaPredicted RBP17.33■□□□□ 0.37
NPHP4-201ENST00000378156 EIF5P55010 431 aaKnown RBP17.33■□□□□ 0.37
NPHP4-201ENST00000378156 KLHL10Q6JEL2 608 aa17.33■□□□□ 0.36
NPHP4-201ENST00000378156 PAG1Q9NWQ8 432 aa17.33■□□□□ 0.36
NPHP4-201ENST00000378156 SYT1P21579 422 aa17.33■□□□□ 0.36
NPHP4-201ENST00000378156 TTC12Q9H892 705 aaPredicted RBP17.33■□□□□ 0.36
NPHP4-201ENST00000378156 ZKSCAN5Q9Y2L8 839 aa17.33■□□□□ 0.36
NPHP4-201ENST00000378156 STX1AQ16623 288 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 ZSCAN16Q9H4T2 348 aaPredicted RBP17.32■□□□□ 0.36
NPHP4-201ENST00000378156 KAT14Q9H8E8 782 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 TPTE2Q6XPS3 522 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 CNNM3Q8NE01 707 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 PLXNC1O60486 1568 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 BICC1Q9H694 974 aaKnown RBP17.32■□□□□ 0.36
NPHP4-201ENST00000378156 LGR6Q9HBX8 967 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 ISM2Q6H9L7 571 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 SLC26A6Q9BXS9 759 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 CALCOCO1Q9P1Z2 691 aa17.32■□□□□ 0.36
NPHP4-201ENST00000378156 RBSNQ9H1K0 784 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 GSTO1P78417 241 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 WTAPQ15007 396 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 ANO6Q4KMQ2 910 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 KRT23Q9C075 422 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 DTNBO60941 627 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 CCDC12Q8WUD4 166 aaPredicted RBP17.31■□□□□ 0.36
NPHP4-201ENST00000378156 STX8Q9UNK0 236 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 NBPF7P0C2Y1 421 aaPredicted RBP17.31■□□□□ 0.36
NPHP4-201ENST00000378156 SLC4A4Q9Y6R1 1079 aa17.31■□□□□ 0.36
NPHP4-201ENST00000378156 TMTC2Q8N394 836 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 FAM200AQ8TCP9 573 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 ZBTB43O43298 467 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 HLA-DOAP06340 250 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 TFCP2Q12800 502 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 TMEM266Q2M3C6 531 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 KIF18AQ8NI77 898 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 ESR2Q92731 530 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 TNIP1Q15025 636 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 NAA16Q6N069 864 aaPredicted RBP17.3■□□□□ 0.36
NPHP4-201ENST00000378156 RTCBQ9Y3I0 505 aaKnown RBP17.3■□□□□ 0.36
NPHP4-201ENST00000378156 YEATS2Q9ULM3 1422 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 HELBQ8NG08 1087 aaPredicted RBP17.3■□□□□ 0.36
NPHP4-201ENST00000378156 NYXQ9GZU5 481 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 CNNM2Q9H8M5 875 aa17.3■□□□□ 0.36
NPHP4-201ENST00000378156 VAT1LQ9HCJ6 419 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 EPB41L2O43491 1005 aaKnown RBP17.29■□□□□ 0.36
NPHP4-201ENST00000378156 CBX1P83916 185 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 RUFY3Q7L099 469 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 NOLC1Q14978 699 aaKnown RBP eCLIP17.29■□□□□ 0.362e-7■■■■■ 29.2
NPHP4-201ENST00000378156 SLC4A8Q2Y0W8 1093 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 CCDC102AQ96A19 550 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 CGNQ9P2M7 1197 aaKnown RBP17.29■□□□□ 0.36
NPHP4-201ENST00000378156 CCDC171Q6TFL3 1326 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 CUL5Q93034 780 aa17.29■□□□□ 0.36
NPHP4-201ENST00000378156 TOP1P11387 765 aaKnown RBP17.28■□□□□ 0.36
NPHP4-201ENST00000378156 CHST3Q7LGC8 479 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 CCDC186Q7Z3E2 898 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 TMC6Q7Z403 805 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 PLBD2Q8NHP8 589 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 KLHDC4Q8TBB5 520 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 ERICH4A6NGS2 130 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 SKIDA1Q1XH10 827 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 DNAJC25Q9H1X3 360 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 CABP5Q9NP86 173 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 INCENPQ9NQS7 918 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 PREX2Q70Z35 1606 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 SNX14Q9Y5W7 946 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 MYOM2P54296 1465 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 LMTK3Q96Q04 1460 aa17.28■□□□□ 0.36
NPHP4-201ENST00000378156 SGSM2O43147 1006 aa17.27■□□□□ 0.36
NPHP4-201ENST00000378156 METTL22Q9BUU2 404 aaPredicted RBP17.27■□□□□ 0.36
NPHP4-201ENST00000378156 PRDM10Q9NQV6 1147 aa17.27■□□□□ 0.36
NPHP4-201ENST00000378156 RTL1A6NKG5 1358 aa17.27■□□□□ 0.36
NPHP4-201ENST00000378156 RNF113AO15541 343 aaKnown RBP17.27■□□□□ 0.36
NPHP4-201ENST00000378156 ZSCAN12O43309 604 aa17.27■□□□□ 0.36
NPHP4-201ENST00000378156 PLCD4Q9BRC7 762 aa17.27■□□□□ 0.36
NPHP4-201ENST00000378156 CDCA7Q9BWT1 371 aaPredicted RBP17.27■□□□□ 0.36
NPHP4-201ENST00000378156 TCP11L1Q9NUJ3 509 aa17.27■□□□□ 0.35
NPHP4-201ENST00000378156 ZFYVE16Q7Z3T8 1539 aa17.27■□□□□ 0.35
NPHP4-201ENST00000378156 PPP1R12BO60237 982 aaPredicted RBP17.27■□□□□ 0.35
NPHP4-201ENST00000378156 ARHGAP29Q52LW3 1261 aa17.27■□□□□ 0.35
NPHP4-201ENST00000378156 FAM89AQ96GI7 184 aa17.27■□□□□ 0.35
NPHP4-201ENST00000378156 KIAA0232Q92628 1395 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 SLC52A2Q9HAB3 445 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 URI1O94763 535 aaPredicted RBP17.26■□□□□ 0.35
NPHP4-201ENST00000378156 CAVIN2O95810 425 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 UBA7P41226 1012 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 TYRO3Q06418 890 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 FEZ1Q99689 392 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 LMBRD1Q9NUN5 540 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 NEMFO60524 1076 aa17.26■□□□□ 0.35
NPHP4-201ENST00000378156 CRACR2AQ9BSW2 395 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 ALG1Q9BT22 464 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 DYNC1I1O14576 645 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 APOBRQ0VD83 1088 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 IFIT1BQ5T764 474 aaKnown RBP17.25■□□□□ 0.35
NPHP4-201ENST00000378156 ZNF397Q8NF99 534 aaPredicted RBP17.25■□□□□ 0.35
NPHP4-201ENST00000378156 FAM227BQ96M60 508 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 SLAIN2Q9P270 581 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms