RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 GDPD2Q9HCC8 539 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 TRAPPC3LQ5T215 181 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 JDP2Q8WYK2 163 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 RNF216Q9NWF9 866 aaPredicted RBP16.4■□□□□ 0.22
TRAF1-201ENST00000373887 ABCC1P33527 1531 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 IRS4O14654 1257 aaPredicted RBP16.4■□□□□ 0.22
TRAF1-201ENST00000373887 TERF1P54274 439 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 SPECC1LQ69YQ0 1117 aa16.39■□□□□ 0.22
TRAF1-201ENST00000373887 CCNL1Q9UK58 526 aaPredicted RBP16.39■□□□□ 0.22
TRAF1-201ENST00000373887 HMGB1P09429 215 aaKnown RBP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 METAP2P50579 478 aaKnown RBP eCLIP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 NAA16Q6N069 864 aaPredicted RBP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 TCEANC2Q96MN5 208 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 BAG4O95429 457 aaKnown RBP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 UQCRFS1P1P0C7P4 283 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 ARL1P40616 181 aaPredicted RBP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 C6orf163Q5TEZ5 329 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 ZC3H12CQ9C0D7 883 aaKnown RBP16.39■□□□□ 0.21
TRAF1-201ENST00000373887 NYXQ9GZU5 481 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 POLKQ9UBT6 870 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 NPATQ14207 1427 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 GRM8O00222 908 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 WDR70Q9NW82 654 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 SBNO2Q9Y2G9 1366 aa16.39■□□□□ 0.21
TRAF1-201ENST00000373887 ITSN2Q9NZM3 1697 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 RHPN1Q8TCX5 695 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 ZBTB9Q96C00 473 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 RAB34Q9BZG1 259 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 HOXC9P31274 260 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 PHAXQ9H814 394 aaKnown RBP16.38■□□□□ 0.21
TRAF1-201ENST00000373887 TFIP11Q9UBB9 837 aaKnown RBP16.38■□□□□ 0.21
TRAF1-201ENST00000373887 IARSP41252 1262 aaKnown RBP16.38■□□□□ 0.21
TRAF1-201ENST00000373887 MXRA7P84157 204 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 BMS1Q14692 1282 aaKnown RBP16.38■□□□□ 0.21
TRAF1-201ENST00000373887 EYA1Q99502 592 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 FBF1Q8TES7 1133 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 IDEP14735 1019 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 KIF5BP33176 963 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 CEP112Q8N8E3 955 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 NCOA7Q8NI08 942 aa16.38■□□□□ 0.21
TRAF1-201ENST00000373887 SCAND2PQ9GZW5 306 aaPredicted RBP16.37■□□□□ 0.21
TRAF1-201ENST00000373887 CCDC160A6NGH7 325 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 GJB2P29033 226 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 SYCP3Q8IZU3 236 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 MRPS9P82933 396 aaKnown RBP16.37■□□□□ 0.21
TRAF1-201ENST00000373887 SNW1Q13573 536 aaKnown RBP16.37■□□□□ 0.21
TRAF1-201ENST00000373887 KIF21AQ7Z4S6 1674 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 SLC9C2Q5TAH2 1124 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 ZNF354CQ86Y25 554 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 HEATR3Q7Z4Q2 680 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 NEK1Q96PY6 1258 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 IKBKGQ9Y6K9 419 aa16.37■□□□□ 0.21
TRAF1-201ENST00000373887 RGS22Q8NE09 1264 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 PCDH11XQ9BZA7 1347 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 PCDH11YQ9BZA8 1340 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 KSR2Q6VAB6 950 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 STK32BQ9NY57 414 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 UHRF1BP1Q6BDS2 1440 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 IFIT1BQ5T764 474 aaKnown RBP16.36■□□□□ 0.21
TRAF1-201ENST00000373887 TBC1D9Q6ZT07 1266 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 HSF2BPO75031 334 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 CCDC12Q8WUD4 166 aaPredicted RBP16.36■□□□□ 0.21
TRAF1-201ENST00000373887 ADCY5O95622 1261 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 PLCD3Q8N3E9 789 aa16.36■□□□□ 0.21
TRAF1-201ENST00000373887 POTEB2H3BUK9 544 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 IGHDP01880 384 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 RBM27Q9P2N5 1060 aaKnown RBP16.35■□□□□ 0.21
TRAF1-201ENST00000373887 LIMCH1Q9UPQ0 1083 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 PTPRKQ15262 1439 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 WTAPQ15007 396 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 CALML4Q96GE6 196 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 MNAT1P51948 309 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 MAGEB6Q8N7X4 407 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 BICD1Q96G01 975 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 MAGEB6P1A0A0J9YX57 407 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 CETN1Q12798 172 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 NECAB1Q8N987 351 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 SAP30BPQ9UHR5 308 aaKnown RBP16.35■□□□□ 0.21
TRAF1-201ENST00000373887 USP21Q9UK80 565 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 SSX2IPQ9Y2D8 614 aa16.35■□□□□ 0.21
TRAF1-201ENST00000373887 CHST3Q7LGC8 479 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 ORC3Q9UBD5 711 aaPredicted RBP16.34■□□□□ 0.21
TRAF1-201ENST00000373887 FLT4P35916 1363 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 RNMTO43148 476 aaKnown RBP16.34■□□□□ 0.21
TRAF1-201ENST00000373887 STX1AQ16623 288 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 CEP135Q66GS9 1140 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 TSPYL6Q8N831 410 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 LMOD1P29536 600 aaPredicted RBP16.34■□□□□ 0.21
TRAF1-201ENST00000373887 PRKG1Q13976 671 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 KLF18A0A0U1RQI7 1052 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 CCDC6Q16204 474 aa16.34■□□□□ 0.21
TRAF1-201ENST00000373887 EIF4G3O43432 1585 aaKnown RBP16.33■□□□□ 0.21
TRAF1-201ENST00000373887 MSL1Q68DK7 614 aa16.33■□□□□ 0.21
TRAF1-201ENST00000373887 KIF20AO95235 890 aa16.33■□□□□ 0.21
TRAF1-201ENST00000373887 HCLS1P14317 486 aaPredicted RBP16.33■□□□□ 0.21
TRAF1-201ENST00000373887 SH2B1Q9NRF2 756 aaPredicted RBP16.33■□□□□ 0.21
TRAF1-201ENST00000373887 CTAGE5O15320 804 aa16.33■□□□□ 0.2
TRAF1-201ENST00000373887 TFCP2Q12800 502 aa16.33■□□□□ 0.2
TRAF1-201ENST00000373887 ZGPATQ8N5A5 531 aaKnown RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms