RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 DHX40Q8IX18 779 aaKnown RBP16.05■□□□□ 0.16
USP49-201ENST00000373006 AOPEPQ8N6M6 819 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 CRYBG1Q9Y4K1 1723 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 KCNA6P17658 529 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 ADD1P35611 737 aaKnown RBP16.05■□□□□ 0.16
USP49-201ENST00000373006 CCT2P78371 535 aaKnown RBP16.05■□□□□ 0.16
USP49-201ENST00000373006 GABPB1Q06547 395 aaPredicted RBP16.05■□□□□ 0.16
USP49-201ENST00000373006 SARM1Q6SZW1 724 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 KRT222Q8N1A0 295 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 ZNF397Q8NF99 534 aaPredicted RBP16.05■□□□□ 0.16
USP49-201ENST00000373006 COL15A1P39059 1388 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 MED23Q9ULK4 1368 aa16.05■□□□□ 0.16
USP49-201ENST00000373006 HOXB7P09629 217 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 NWD1Q149M9 1564 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 CCAR2Q8N163 923 aaKnown RBP16.04■□□□□ 0.16
USP49-201ENST00000373006 USP28Q96RU2 1077 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 DNAJC2Q99543 621 aaKnown RBP16.04■□□□□ 0.16
USP49-201ENST00000373006 HMG20BQ9P0W2 317 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 CYP21A2P08686 494 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 SNW1Q13573 536 aaKnown RBP16.04■□□□□ 0.16
USP49-201ENST00000373006 TERF2Q15554 542 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 TRIM34Q9BYJ4 488 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 ALDH8A1Q9H2A2 487 aaPredicted RBP16.04■□□□□ 0.16
USP49-201ENST00000373006 ZSCAN16Q9H4T2 348 aaPredicted RBP16.04■□□□□ 0.16
USP49-201ENST00000373006 SNRKQ9NRH2 765 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 TOPAZ1Q8N9V7 1692 aa16.04■□□□□ 0.16
USP49-201ENST00000373006 KINO60870 393 aaKnown RBP16.03■□□□□ 0.16
USP49-201ENST00000373006 CAVIN2O95810 425 aa16.03■□□□□ 0.16
USP49-201ENST00000373006 ME1P48163 572 aa16.03■□□□□ 0.16
USP49-201ENST00000373006 CCDC73Q6ZRK6 1079 aa16.03■□□□□ 0.16
USP49-201ENST00000373006 GIGYF1O75420 1035 aaPredicted RBP16.03■□□□□ 0.16
USP49-201ENST00000373006 SLFNL1Q499Z3 407 aa16.03■□□□□ 0.16
USP49-201ENST00000373006 NCOA5Q9HCD5 579 aaKnown RBP16.03■□□□□ 0.16
USP49-201ENST00000373006 NEMFO60524 1076 aa16.02■□□□□ 0.16
USP49-201ENST00000373006 TSGA10IPQ3SY00 556 aa16.02■□□□□ 0.16
USP49-201ENST00000373006 LINS1Q8NG48 757 aa16.02■□□□□ 0.16
USP49-201ENST00000373006 FMNL2Q96PY5 1086 aa16.02■□□□□ 0.16
USP49-201ENST00000373006 APOBRQ0VD83 1088 aa16.02■□□□□ 0.15
USP49-201ENST00000373006 EPHA10Q5JZY3 1008 aa16.02■□□□□ 0.15
USP49-201ENST00000373006 DHX37Q8IY37 1157 aaKnown RBP16.02■□□□□ 0.15
USP49-201ENST00000373006 FSIP1Q8NA03 581 aa16.02■□□□□ 0.15
USP49-201ENST00000373006 TMX1Q9H3N1 280 aa16.02■□□□□ 0.15
USP49-201ENST00000373006 RCOR1Q9UKL0 485 aa16.02■□□□□ 0.15
USP49-201ENST00000373006 N4BP2Q86UW6 1770 aaPredicted RBP16.02■□□□□ 0.15
USP49-201ENST00000373006 KRT32Q14532 448 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 LRRN4CLQ8ND94 238 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 ADGRL3Q9HAR2 1447 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 SLU7O95391 586 aaKnown RBP16.01■□□□□ 0.15
USP49-201ENST00000373006 ERCC6LQ2NKX8 1250 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 CHST3Q7LGC8 479 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 ERO1AQ96HE7 468 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 SDF4Q9BRK5 362 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 ANO10Q9NW15 660 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 AGLP35573 1532 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 USPL1Q5W0Q7 1092 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 DDX46Q7L014 1031 aaKnown RBP16.01■□□□□ 0.15
USP49-201ENST00000373006 CHMP4CQ96CF2 233 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 DBNLQ9UJU6 430 aaKnown RBP16.01■□□□□ 0.15
USP49-201ENST00000373006 HDAC5Q9UQL6 1122 aa16.01■□□□□ 0.15
USP49-201ENST00000373006 A0A1B0GVL5 298 aa16■□□□□ 0.15
USP49-201ENST00000373006 PTPDC1A2A3K4 754 aa16■□□□□ 0.15
USP49-201ENST00000373006 CTAGE5O15320 804 aa16■□□□□ 0.15
USP49-201ENST00000373006 CTDNEP1O95476 244 aa16■□□□□ 0.15
USP49-201ENST00000373006 MYL6BP14649 208 aa16■□□□□ 0.15
USP49-201ENST00000373006 STOX1Q6ZVD7 989 aa16■□□□□ 0.15
USP49-201ENST00000373006 RIC3Q7Z5B4 369 aa16■□□□□ 0.15
USP49-201ENST00000373006 NSUN7Q8NE18 718 aaKnown RBP16■□□□□ 0.15
USP49-201ENST00000373006 ZNF446Q9NWS9 450 aa16■□□□□ 0.15
USP49-201ENST00000373006 PIK3C2AO00443 1686 aa16■□□□□ 0.15
USP49-201ENST00000373006 IGKV5-2P06315 115 aa16■□□□□ 0.15
USP49-201ENST00000373006 NBPF11Q86T75 865 aa16■□□□□ 0.15
USP49-201ENST00000373006 CEP57L1Q8IYX8 460 aa16■□□□□ 0.15
USP49-201ENST00000373006 SMC2O95347 1197 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 TNNT3P45378 269 aaPredicted RBP15.99■□□□□ 0.15
USP49-201ENST00000373006 FAM160A1Q05DH4 1040 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 SYT10Q6XYQ8 523 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 ENGASEQ8NFI3 743 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 ERBB3P21860 1342 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 A0A0G2JLW4 131 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 BIN1O00499 593 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 TFCP2Q12800 502 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 GORABQ5T7V8 394 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 AKAP4Q5JQC9 854 aa15.99■□□□□ 0.15
USP49-201ENST00000373006 E4F1Q66K89 784 aaPredicted RBP15.99■□□□□ 0.15
USP49-201ENST00000373006 RGPD8O14715 1765 aaPredicted RBP15.98■□□□□ 0.15
USP49-201ENST00000373006 PSME1Q06323 249 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 OTUD7BQ6GQQ9 843 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 SMARCC2Q8TAQ2 1214 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 RNMTO43148 476 aaKnown RBP15.98■□□□□ 0.15
USP49-201ENST00000373006 DPCR1Q3MIW9 517 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 ESCO1Q5FWF5 840 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 ISM2Q6H9L7 571 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 TMC6Q7Z403 805 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 IP6K1Q92551 441 aa15.98■□□□□ 0.15
USP49-201ENST00000373006 XPO4Q9C0E2 1151 aaKnown RBP15.98■□□□□ 0.15
USP49-201ENST00000373006 PIP4K2AP48426 406 aaPredicted RBP15.97■□□□□ 0.15
USP49-201ENST00000373006 C1orf141Q5JVX7 400 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 IFNKQ9P0W0 207 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 PCDHA7Q9UN72 937 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 U3KPZ7 1027 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms