RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 CCDC91Q7Z6B0 441 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 CDCA7Q9BWT1 371 aaPredicted RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 ZC3H12CQ9C0D7 883 aaKnown RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 ORC3Q9UBD5 711 aaPredicted RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 ZFYVE16Q7Z3T8 1539 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 TMCO5BA8MYB1 307 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 CBX1P83916 185 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 HELBQ8NG08 1087 aaPredicted RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 JDP2Q8WYK2 163 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 DDX17Q92841 729 aaKnown RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 ANO10Q9NW15 660 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 NSFL1CQ9UNZ2 370 aaKnown RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 FGFR1OPO95684 399 aaKnown RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 GJC1P36383 396 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 BMP2KLQ5H9B9 411 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 SLC9C2Q5TAH2 1124 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 ANKRD2Q9GZV1 360 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 TCP11L1Q9NUJ3 509 aa11.26□□□□□ -0.61
COL4A6-202ENST00000372216 CWC15Q9P013 229 aaKnown RBP11.26□□□□□ -0.61
COL4A6-202ENST00000372216 POLR3AO14802 1390 aaPredicted RBP11.25□□□□□ -0.61
COL4A6-202ENST00000372216 MAP3K19Q56UN5 1328 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 PAG1Q9NWQ8 432 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 ATXN8OSP0DMR3 200 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 FAM98CQ17RN3 349 aaKnown RBP11.25□□□□□ -0.61
COL4A6-202ENST00000372216 MCMDC2Q4G0Z9 681 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 CCDC183Q5T5S1 534 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 FSIP1Q8NA03 581 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 KLF18A0A0U1RQI7 1052 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 ESR2Q92731 530 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 EYA3Q99504 573 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 CNNM2Q9H8M5 875 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 TDRD12Q587J7 1177 aaKnown RBP11.25□□□□□ -0.61
COL4A6-202ENST00000372216 CEP63Q96MT8 703 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 HEATR3Q7Z4Q2 680 aa11.25□□□□□ -0.61
COL4A6-202ENST00000372216 CSPG5O95196 566 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 AMPD3Q01432 767 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 TFCP2Q12800 502 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 PPP4R3BQ5MIZ7 849 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 MAGEB6Q8N7X4 407 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 KRT24Q2M2I5 525 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 SYNCQ9H7C4 482 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 SSX2IPQ9Y2D8 614 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 CFAP74Q9C0B2 1584 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 PRKCSHP14314 528 aaPredicted RBP11.24□□□□□ -0.61
COL4A6-202ENST00000372216 PRKG1Q13976 671 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 SPA17Q15506 151 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 SSFA2P28290 1259 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 IQCEQ6IPM2 695 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 LRRC2Q9BYS8 371 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 SDSP20132 328 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 LINS1Q8NG48 757 aa11.24□□□□□ -0.61
COL4A6-202ENST00000372216 HDAC1Q13547 482 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 APBB1IPQ7Z5R6 666 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 ANKRD44Q8N8A2 993 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 CNBD1Q8NA66 436 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 MIGA1Q8NAN2 632 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 PHACTR3Q96KR7 559 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 CARD14Q9BXL6 1004 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 COL17A1Q9UMD9 1497 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 LMOD1P29536 600 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 TAF12Q16514 161 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 TSPYL6Q8N831 410 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 ZBTB43O43298 467 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 BICC1Q9H694 974 aaKnown RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 NMIQ13287 307 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 RTN1Q16799 776 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 SRRTQ9BXP5 876 aaKnown RBP11.23□□□□□ -0.61
COL4A6-202ENST00000372216 CETN2P41208 172 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 PDE1AP54750 535 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 LRSAM1Q6UWE0 723 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 USP21Q9UK80 565 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 SBNO1A3KN83 1393 aa11.23□□□□□ -0.61
COL4A6-202ENST00000372216 PARD3Q8TEW0 1356 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 STX6O43752 255 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 TFIP11Q9UBB9 837 aaKnown RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 EDC4Q6P2E9 1401 aaKnown RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 TMEM110-MUSTN1A8MSY1 372 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 LDHBP07195 334 aaKnown RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 IDEP14735 1019 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 ARHGAP29Q52LW3 1261 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 BRF1Q92994 677 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 NUP88Q99567 741 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 RBM8AQ9Y5S9 174 aaKnown RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 RNF113AO15541 343 aaKnown RBP11.22□□□□□ -0.61
COL4A6-202ENST00000372216 STAMBPO95630 424 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 STXBP4Q6ZWJ1 553 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 INCENPQ9NQS7 918 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 IFFO1Q0D2I5 559 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 PKD2L1Q9P0L9 805 aa11.22□□□□□ -0.61
COL4A6-202ENST00000372216 CTAGE5O15320 804 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 HOOK3Q86VS8 718 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 TMTC2Q8N394 836 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 MCM9Q9NXL9 1143 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 GNAT2P19087 354 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 NECAB1Q8N987 351 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 CCDC148Q8NFR7 591 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 GOLGA6L7A0A1B0GV03 622 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 PLCG2P16885 1265 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 MTIF2P46199 727 aaKnown RBP11.21□□□□□ -0.61
COL4A6-202ENST00000372216 CCDC40Q4G0X9 1142 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 344.2 ms