RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 ZSWIM6Q9HCJ5 1215 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 KIAA1468Q9P260 1216 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 LY75O60449 1722 aa11.22□□□□□ -0.61
TPM3-213ENST00000368545 CT47B1P0C2W7 299 aaPredicted RBP11.22□□□□□ -0.61
TPM3-213ENST00000368545 ERCC3P19447 782 aa11.22□□□□□ -0.61
TPM3-213ENST00000368545 GRIPAP1Q4V328 841 aa11.22□□□□□ -0.61
TPM3-213ENST00000368545 SOWAHDA6NJG2 315 aa11.21□□□□□ -0.61
TPM3-213ENST00000368545 SERPINB4P48594 390 aa11.21□□□□□ -0.61
TPM3-213ENST00000368545 IRX6P78412 446 aaPredicted RBP11.21□□□□□ -0.61
TPM3-213ENST00000368545 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.21□□□□□ -0.61
TPM3-213ENST00000368545 FAM174AQ8TBP5 190 aa11.21□□□□□ -0.61
TPM3-213ENST00000368545 RGPD5Q99666 1765 aa11.21□□□□□ -0.61
TPM3-213ENST00000368545 TUBGCP6Q96RT7 1819 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 FAM196BA6NMK8 535 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L15C9J2P7 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L10C9JJH3 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L13C9JLJ4 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L12C9JPN9 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L11C9JVI0 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L21D6R901 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L18D6R9N7 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L22D6RA61 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L17D6RBQ6 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L19D6RCP7 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L20D6RJB6 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 USP17L24Q0WX57 530 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 RGPD2P0DJD1 1756 aa11.21□□□□□ -0.62
TPM3-213ENST00000368545 RIMBP2O15034 1052 aa11.2□□□□□ -0.62
TPM3-213ENST00000368545 TGFB2P61812 414 aa11.2□□□□□ -0.62
TPM3-213ENST00000368545 PLEKHM2Q8IWE5 1019 aa11.2□□□□□ -0.62
TPM3-213ENST00000368545 NCAPD2Q15021 1401 aa11.2□□□□□ -0.62
TPM3-213ENST00000368545 FANCIQ9NVI1 1328 aa11.2□□□□□ -0.62
TPM3-213ENST00000368545 SRCAPQ6ZRS2 3230 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 ZBBXA8MT70 800 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 SCNN1AP37088 669 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 GAS2L2Q8NHY3 880 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 BCL2L13Q9BXK5 485 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 PPP4R2Q9NY27 417 aa11.19□□□□□ -0.62
TPM3-213ENST00000368545 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
TPM3-213ENST00000368545 PTF1AQ7RTS3 328 aa11.18□□□□□ -0.62
TPM3-213ENST00000368545 ATP6V1AP38606 617 aa11.18□□□□□ -0.62
TPM3-213ENST00000368545 GNAI1P63096 354 aa11.18□□□□□ -0.62
TPM3-213ENST00000368545 PTK7Q13308 1070 aa11.18□□□□□ -0.62
TPM3-213ENST00000368545 IFT57Q9NWB7 429 aa11.18□□□□□ -0.62
TPM3-213ENST00000368545 CFHP08603 1231 aa11.17□□□□□ -0.62
TPM3-213ENST00000368545 RETREG3Q86VR2 466 aa11.17□□□□□ -0.62
TPM3-213ENST00000368545 LTV1Q96GA3 475 aaPredicted RBP11.17□□□□□ -0.62
TPM3-213ENST00000368545 KCNK17Q96T54 332 aa11.17□□□□□ -0.62
TPM3-213ENST00000368545 PKD1L3Q7Z443 1732 aa11.17□□□□□ -0.62
TPM3-213ENST00000368545 LRRC4BQ9NT99 713 aa11.17□□□□□ -0.62
TPM3-213ENST00000368545 HTATSF1O43719 755 aaKnown RBP11.16□□□□□ -0.62
TPM3-213ENST00000368545 IL2RBP14784 551 aa11.16□□□□□ -0.62
TPM3-213ENST00000368545 MARSP56192 900 aaKnown RBP11.16□□□□□ -0.62
TPM3-213ENST00000368545 ANKRD24Q8TF21 1146 aa11.16□□□□□ -0.62
TPM3-213ENST00000368545 GIPC2Q8TF65 315 aa11.16□□□□□ -0.62
TPM3-213ENST00000368545 CLP1Q92989 425 aaKnown RBP11.16□□□□□ -0.62
TPM3-213ENST00000368545 ERBB3P21860 1342 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 RASA1P20936 1047 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 DESI1Q6ICB0 168 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 FAM200AQ8TCP9 573 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 TSR2Q969E8 191 aaKnown RBP11.15□□□□□ -0.62
TPM3-213ENST00000368545 SEPT9Q9UHD8 586 aaPredicted RBP11.15□□□□□ -0.62
TPM3-213ENST00000368545 KIF13BQ9NQT8 1826 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 ZNF853P0CG23 659 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 NCOA4Q13772 614 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 LYPD8Q6UX82 237 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 RTF1Q92541 710 aaKnown RBP11.15□□□□□ -0.62
TPM3-213ENST00000368545 ABHD8Q96I13 439 aa11.15□□□□□ -0.62
TPM3-213ENST00000368545 RARSP54136 660 aaKnown RBP11.14□□□□□ -0.63
TPM3-213ENST00000368545 MTHFSDQ2M296 383 aaKnown RBP11.14□□□□□ -0.63
TPM3-213ENST00000368545 NBPF6Q5VWK0 638 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 COL23A1Q86Y22 540 aaPredicted RBP11.14□□□□□ -0.63
TPM3-213ENST00000368545 NBPF4Q96M43 638 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 NMRK2Q9NPI5 230 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 VIRMAQ69YN4 1812 aaKnown RBP11.14□□□□□ -0.63
TPM3-213ENST00000368545 ATP2B4P23634 1241 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 ZBED2Q9BTP6 218 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 FKBPLQ9UIM3 349 aa11.14□□□□□ -0.63
TPM3-213ENST00000368545 EXOSC9Q06265 439 aaKnown RBP11.13□□□□□ -0.63
TPM3-213ENST00000368545 GCC1Q96CN9 775 aa11.13□□□□□ -0.63
TPM3-213ENST00000368545 BIN2Q9UBW5 565 aaPredicted RBP11.13□□□□□ -0.63
TPM3-213ENST00000368545 AXIN2Q9Y2T1 843 aa11.13□□□□□ -0.63
TPM3-213ENST00000368545 GNAT3A8MTJ3 354 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 PLIN1O60240 522 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 BCAR3O75815 825 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 THUMPD2Q9BTF0 503 aaKnown RBP11.12□□□□□ -0.63
TPM3-213ENST00000368545 CCNL1Q9UK58 526 aaPredicted RBP11.12□□□□□ -0.63
TPM3-213ENST00000368545 LAS1LQ9Y4W2 734 aaKnown RBP11.12□□□□□ -0.63
TPM3-213ENST00000368545 ANKRD33BA6NCL7 494 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 TCF3P15923 654 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 AMOTQ4VCS5 1084 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 USHBP1Q8N6Y0 703 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 MBIPQ9NS73 344 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 ARFGEF1Q9Y6D6 1849 aa11.12□□□□□ -0.63
TPM3-213ENST00000368545 HSP90B1P14625 803 aaKnown RBP11.11□□□□□ -0.63
TPM3-213ENST00000368545 CANXP27824 592 aaKnown RBP11.11□□□□□ -0.63
TPM3-213ENST00000368545 PDE3AQ14432 1141 aa11.11□□□□□ -0.63
TPM3-213ENST00000368545 ALDH1L2Q3SY69 923 aa11.11□□□□□ -0.63
TPM3-213ENST00000368545 NPAS4Q8IUM7 802 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms