RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 EIF4G2P78344 907 aaKnown RBP eCLIP11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 TNIP1Q15025 636 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 DPP8Q6V1X1 898 aaPredicted RBP11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 SP8Q8IXZ3 490 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 MPNDQ8N594 471 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 R3HDMLQ9H3Y0 253 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 H7C1D1 291 aa11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 SLC10A5Q5PT55 438 aa11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 RBM26Q5T8P6 1007 aaKnown RBP11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 MOB2Q70IA6 237 aa11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 DPF2Q92785 391 aa11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 RRP7AQ9Y3A4 280 aaKnown RBP11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 RTL9Q8NET4 1388 aa11.39□□□□□ -0.59
HMGB1P39-201ENST00000366304 MYL6BP14649 208 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 CNGB1Q14028 1251 aaPredicted RBP11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 LRP10Q7Z4F1 713 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 SUPT20HQ8NEM7 779 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 CDCA5Q96FF9 252 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 DBNDD1Q9H9R9 158 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 METRNQ9UJH8 293 aa11.38□□□□□ -0.59
HMGB1P39-201ENST00000366304 LAMB4A4D0S4 1761 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 POTEFA5A3E0 1075 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 HCLS1P14317 486 aaPredicted RBP11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 SLC39A7Q92504 469 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 NLRP3Q96P20 1036 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 GGA3Q9NZ52 723 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 SCAF8Q9UPN6 1271 aaKnown RBP11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 TRIM35Q9UPQ4 493 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 SZT2Q5T011 3432 aa11.37□□□□□ -0.59
HMGB1P39-201ENST00000366304 POLR2AP24928 1970 aaKnown RBP11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 BBOX1O75936 387 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 PKN2Q16513 984 aaKnown RBP11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 LHX8Q68G74 356 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 GIGYF2Q6Y7W6 1299 aaKnown RBP11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 KIF6Q6ZMV9 814 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 ZNF428Q96B54 188 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 GCC1Q96CN9 775 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 TAF1P21675 1872 aa11.36□□□□□ -0.59
HMGB1P39-201ENST00000366304 AKAP11Q9UKA4 1901 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 GPR25O00155 361 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 EIF4A1P60842 406 aaKnown RBP11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 TAF7Q15545 349 aaPredicted RBP11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 DOK7Q18PE1 504 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 PROSER3Q2NL68 480 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 FBXO46Q6PJ61 603 aaPredicted RBP11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 DCPSQ96C86 337 aaKnown RBP11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 THUMPD2Q9BTF0 503 aaKnown RBP11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 POLLQ9UGP5 575 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 HDAC9Q9UKV0 1011 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 LAMB2P55268 1798 aa11.35□□□□□ -0.59
HMGB1P39-201ENST00000366304 UBE2Q2LH0YL09 131 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 RIMBP2O15034 1052 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 C7P10643 843 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 GRAPQ13588 217 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 PDIA6Q15084 440 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 KIF4BQ2VIQ3 1234 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 PPP1R42Q7Z4L9 355 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 GRAPLQ8TC17 118 aaPredicted RBP11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 UTP14AQ9BVJ6 771 aaKnown RBP11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 TIMELESSQ9UNS1 1208 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 LRRC37AA6NMS7 1700 aa11.34□□□□□ -0.59
HMGB1P39-201ENST00000366304 ANXA1P04083 346 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 PSEN1P49768 467 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 GPSM2P81274 684 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 PARP10Q53GL7 1025 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 ANGEL2Q5VTE6 544 aaKnown RBP11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 PRAMEF18Q5VWM3 479 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 SULF1Q8IWU6 871 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 RTF1Q92541 710 aaKnown RBP11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 TMX4Q9H1E5 349 aaPredicted RBP11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 KDM3BQ7LBC6 1761 aa11.33□□□□□ -0.6
HMGB1P39-201ENST00000366304 BRCA2P51587 3418 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 ECE2O60344 883 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 RPS12P25398 132 aaKnown RBP11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 TM4SF4P48230 202 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 CAP1Q01518 475 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 MKRN3Q13064 507 aaKnown RBP11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 WASHC4Q2M389 1173 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 NLRP10Q86W26 655 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 CELF1Q92879 486 aaKnown RBP11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 SCN9AQ15858 1988 aa11.32□□□□□ -0.6
HMGB1P39-201ENST00000366304 CENPFP49454 3210 aa11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 HTATSF1O43719 755 aaKnown RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 VIL1P09327 827 aaKnown RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 ZNF280AP59817 542 aaPredicted RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 SCARF1Q14162 830 aa11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 NOM1Q5C9Z4 860 aaKnown RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 DDX46Q7L014 1031 aaKnown RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 COLQQ9Y215 455 aaPredicted RBP11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 ANKRD36CQ5JPF3 1778 aa11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 PAPPA2Q9BXP8 1791 aa11.31□□□□□ -0.6
HMGB1P39-201ENST00000366304 TRIOBPQ9H2D6 2365 aa11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 U2AF1L5P0DN76 240 aaPredicted RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 EN2P19622 333 aaPredicted RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 U2AF1Q01081 240 aaKnown RBP eCLIP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 PDAP1Q13442 181 aaKnown RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 RNF25Q96BH1 459 aaPredicted RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 NSFL1CQ9UNZ2 370 aaKnown RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 RANBP2P49792 3224 aaKnown RBP11.3□□□□□ -0.6
HMGB1P39-201ENST00000366304 C6orf229H3BNL8 230 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms