RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 TXLNAP40222 546 aa16.06■□□□□ 0.16
COL6A1-201ENST00000361866 ZNHIT6Q9NWK9 470 aaKnown RBP16.06■□□□□ 0.16
COL6A1-201ENST00000361866 MAP3K5Q99683 1374 aa16.06■□□□□ 0.16
COL6A1-201ENST00000361866 EDC4Q6P2E9 1401 aaKnown RBP16.05■□□□□ 0.16
COL6A1-201ENST00000361866 NFATC2IPQ8NCF5 419 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 ZNF215Q9UL58 517 aaPredicted RBP16.05■□□□□ 0.16
COL6A1-201ENST00000361866 TNRQ92752 1358 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 KCNG4Q8TDN1 519 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 EAF2Q96CJ1 260 aaPredicted RBP16.05■□□□□ 0.16
COL6A1-201ENST00000361866 SEC62Q99442 399 aaKnown RBP16.05■□□□□ 0.16
COL6A1-201ENST00000361866 OSBPL3Q9H4L5 887 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 CHRNA2Q15822 529 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 CENPHQ9H3R5 247 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 TTC37Q6PGP7 1564 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 IFIT5Q13325 482 aaKnown RBP16.05■□□□□ 0.16
COL6A1-201ENST00000361866 SUCLG2Q96I99 432 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 TSPYL1Q9H0U9 437 aa16.05■□□□□ 0.16
COL6A1-201ENST00000361866 PHACTR2O75167 634 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 AFMP43652 599 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 DNA2P51530 1060 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 EIF5P55010 431 aaKnown RBP16.04■□□□□ 0.16
COL6A1-201ENST00000361866 NCOA7Q8NI08 942 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 PDLIM2Q96JY6 352 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 DEF6Q9H4E7 631 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 PRDM11Q9NQV5 511 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 ARFGAP3Q9NP61 516 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 PRC1O43663 620 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 FAM160A1Q05DH4 1040 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 TMEM67Q5HYA8 995 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 LSG1Q9H089 658 aaKnown RBP16.04■□□□□ 0.16
COL6A1-201ENST00000361866 PAG1Q9NWQ8 432 aa16.04■□□□□ 0.16
COL6A1-201ENST00000361866 LDHAL6AQ6ZMR3 332 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 KIAA1328Q86T90 577 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 KIAA1524Q8TCG1 905 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 LZTFL1Q9NQ48 299 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 RGS12O14924 1447 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 TTC21AQ8NDW8 1320 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 KAT6BQ8WYB5 2073 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 ABCA8O94911 1581 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 PLCD3Q8N3E9 789 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 NUP88Q99567 741 aaPredicted RBP16.03■□□□□ 0.16
COL6A1-201ENST00000361866 KIAA0232Q92628 1395 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 STX17P56962 302 aa16.03■□□□□ 0.16
COL6A1-201ENST00000361866 AKAP2Q9Y2D5 859 aa16.02■□□□□ 0.16
COL6A1-201ENST00000361866 AKAP4Q5JQC9 854 aa16.02■□□□□ 0.16
COL6A1-201ENST00000361866 PUF60Q9UHX1 559 aaKnown RBP16.02■□□□□ 0.15
COL6A1-201ENST00000361866 ERCC6LQ2NKX8 1250 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 CCDC181Q5TID7 509 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 ERO1AQ96HE7 468 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 CRACR2AQ9BSW2 395 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 FTOQ9C0B1 505 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL6A1-201ENST00000361866 KIF24Q5T7B8 1368 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 KIF20AO95235 890 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 SSRP1Q08945 709 aaKnown RBP16.01■□□□□ 0.15
COL6A1-201ENST00000361866 SPECC1Q5M775 1068 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 AMOTL1Q8IY63 956 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 CACTINQ8WUQ7 758 aaKnown RBP16.01■□□□□ 0.15
COL6A1-201ENST00000361866 ZSWIM6Q9HCJ5 1215 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 MRVI1Q9Y6F6 885 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 TRPM2O94759 1503 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 SNRPA1P09661 255 aaKnown RBP16.01■□□□□ 0.15
COL6A1-201ENST00000361866 AOX1Q06278 1338 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 USP28Q96RU2 1077 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 CARD6Q9BX69 1037 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 CWC25Q9NXE8 425 aaPredicted RBP16.01■□□□□ 0.15
COL6A1-201ENST00000361866 STAP2Q9UGK3 403 aa16.01■□□□□ 0.15
COL6A1-201ENST00000361866 RANBP6O60518 1105 aaKnown RBP16■□□□□ 0.15
COL6A1-201ENST00000361866 IBSPP21815 317 aaPredicted RBP16■□□□□ 0.15
COL6A1-201ENST00000361866 NAA30Q147X3 362 aaPredicted RBP16■□□□□ 0.15
COL6A1-201ENST00000361866 TANGO6Q9C0B7 1094 aa16■□□□□ 0.15
COL6A1-201ENST00000361866 WASF1Q92558 559 aa16■□□□□ 0.15
COL6A1-201ENST00000361866 TM6SF1Q9BZW5 370 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 CDC42BPAQ5VT25 1732 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 SAMD1Q6SPF0 538 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 ZBTB43O43298 467 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 EVCP57679 992 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 UHRF1BP1LA0JNW5 1464 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 N4BP3O15049 544 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 EIF4A1P60842 406 aaKnown RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 STIM1Q13586 685 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 PTPN21Q16825 1174 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 NBPF6Q5VWK0 638 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 NBPF4Q96M43 638 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 CEP89Q96ST8 783 aa15.99■□□□□ 0.15
COL6A1-201ENST00000361866 XPO4Q9C0E2 1151 aaKnown RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 TLR7Q9NYK1 1049 aaKnown RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 IQSEC3Q9UPP2 1182 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-201ENST00000361866 CYP2E1P05181 493 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-201ENST00000361866 EPS15P42566 896 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 ENOX2Q16206 610 aaKnown RBP15.98■□□□□ 0.15
COL6A1-201ENST00000361866 SLC9C2Q5TAH2 1124 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 ZHX3Q9H4I2 956 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 SLC4A8Q2Y0W8 1093 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 MEX3CQ5U5Q3 659 aaKnown RBP15.98■□□□□ 0.15
COL6A1-201ENST00000361866 DDX21Q9NR30 783 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL6A1-201ENST00000361866 SSBP05455 408 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL6A1-201ENST00000361866 ARID5BQ14865 1188 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 TNNI3KQ59H18 835 aa15.98■□□□□ 0.15
COL6A1-201ENST00000361866 ZNF594Q96JF6 807 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms