RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MPHOSPH8Q99549 860 aa22.78■■□□□ 1.24
CLN3-206ENST00000360019 TAF1P21675 1872 aa22.77■■□□□ 1.24
CLN3-206ENST00000360019 SPEF2Q9C093 1822 aa22.77■■□□□ 1.24
CLN3-206ENST00000360019 MSL1Q68DK7 614 aa22.77■■□□□ 1.24
CLN3-206ENST00000360019 NRXN2Q9P2S2 1712 aa22.76■■□□□ 1.23
CLN3-206ENST00000360019 ERC2O15083 957 aa22.76■■□□□ 1.23
CLN3-206ENST00000360019 CELF1Q92879 486 aaKnown RBP22.76■■□□□ 1.23
CLN3-206ENST00000360019 MROH5Q6ZUA9 1318 aa22.76■■□□□ 1.23
CLN3-206ENST00000360019 CDC45O75419 566 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 MMP10P09238 476 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 TBC1D9Q6ZT07 1266 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 ANKRD18AQ8IVF6 992 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 NEUROD6Q96NK8 337 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 AKAP2Q9Y2D5 859 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 PDE8BO95263 885 aa22.75■■□□□ 1.23
CLN3-206ENST00000360019 TRIM6-TRIM34B2RNG4 842 aa22.74■■□□□ 1.23
CLN3-206ENST00000360019 MAP4K4O95819 1239 aaPredicted RBP22.74■■□□□ 1.23
CLN3-206ENST00000360019 PDGFDQ9GZP0 370 aaPredicted RBP22.74■■□□□ 1.23
CLN3-206ENST00000360019 CRY2Q49AN0 593 aa22.73■■□□□ 1.23
CLN3-206ENST00000360019 HELBQ8NG08 1087 aaPredicted RBP22.73■■□□□ 1.23
CLN3-206ENST00000360019 ATP2B3Q16720 1220 aa22.73■■□□□ 1.23
CLN3-206ENST00000360019 RILPL2Q969X0 211 aa22.73■■□□□ 1.23
CLN3-206ENST00000360019 BSDC1Q9NW68 430 aaPredicted RBP22.73■■□□□ 1.23
CLN3-206ENST00000360019 ADORA1P30542 326 aa22.72■■□□□ 1.23
CLN3-206ENST00000360019 DDX46Q7L014 1031 aaKnown RBP22.72■■□□□ 1.23
CLN3-206ENST00000360019 ATP5JP18859 108 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 RPS8P62241 208 aaKnown RBP22.71■■□□□ 1.23
CLN3-206ENST00000360019 CHRNDQ07001 517 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 XAGE2Q96GT9 111 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 BOLA2Q9H3K6 86 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 PARP3Q9Y6F1 533 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 TAF5LO75529 589 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 FGFR2P21802 821 aa22.71■■□□□ 1.23
CLN3-206ENST00000360019 ANKRD31Q8N7Z5 1873 aa22.7■■□□□ 1.22
CLN3-206ENST00000360019 KLRG2A4D1S0 409 aaPredicted RBP22.7■■□□□ 1.22
CLN3-206ENST00000360019 PUM3Q15397 648 aaKnown RBP22.7■■□□□ 1.22
CLN3-206ENST00000360019 CNTROBQ8N137 903 aa22.69■■□□□ 1.22
CLN3-206ENST00000360019 MINPP1Q9UNW1 487 aa22.69■■□□□ 1.22
CLN3-206ENST00000360019 SNAP23O00161 211 aa22.68■■□□□ 1.22
CLN3-206ENST00000360019 UPF1Q92900 1129 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLN3-206ENST00000360019 A0A1B0GUL6 1792 aa22.68■■□□□ 1.22
CLN3-206ENST00000360019 GRAPQ13588 217 aa22.68■■□□□ 1.22
CLN3-206ENST00000360019 GRAPLQ8TC17 118 aaPredicted RBP22.68■■□□□ 1.22
CLN3-206ENST00000360019 LPIN2Q92539 896 aa22.68■■□□□ 1.22
CLN3-206ENST00000360019 BRIP1Q9BX63 1249 aa22.68■■□□□ 1.22
CLN3-206ENST00000360019 RPGRQ92834 1020 aaKnown RBP22.67■■□□□ 1.22
CLN3-206ENST00000360019 AK9Q5TCS8 1911 aa22.67■■□□□ 1.22
CLN3-206ENST00000360019 ARAP2Q8WZ64 1704 aa22.66■■□□□ 1.22
CLN3-206ENST00000360019 MFAP1P55081 439 aaKnown RBP22.66■■□□□ 1.22
CLN3-206ENST00000360019 NDUFB9Q9Y6M9 179 aa22.66■■□□□ 1.22
CLN3-206ENST00000360019 CHMLP26374 656 aa22.66■■□□□ 1.22
CLN3-206ENST00000360019 EVI5LQ96CN4 794 aa22.66■■□□□ 1.22
CLN3-206ENST00000360019 HAUS7Q99871 368 aa22.66■■□□□ 1.22
CLN3-206ENST00000360019 HOXA10P31260 410 aaPredicted RBP22.65■■□□□ 1.22
CLN3-206ENST00000360019 CCDC158Q5M9N0 1113 aa22.65■■□□□ 1.22
CLN3-206ENST00000360019 GORABQ5T7V8 394 aa22.65■■□□□ 1.22
CLN3-206ENST00000360019 EDC3Q96F86 508 aaKnown RBP22.65■■□□□ 1.22
CLN3-206ENST00000360019 CASC1Q6TDU7 716 aa22.64■■□□□ 1.22
CLN3-206ENST00000360019 SLC51AQ86UW1 340 aa22.64■■□□□ 1.22
CLN3-206ENST00000360019 SLC5A1P13866 664 aa22.64■■□□□ 1.21
CLN3-206ENST00000360019 TTC39AQ5SRH9 613 aa22.64■■□□□ 1.21
CLN3-206ENST00000360019 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.64■■□□□ 1.21
CLN3-206ENST00000360019 RBM17Q96I25 401 aaKnown RBP22.64■■□□□ 1.21
CLN3-206ENST00000360019 DNAJC2Q99543 621 aaKnown RBP22.64■■□□□ 1.21
CLN3-206ENST00000360019 GOLGB1Q14789 3259 aaKnown RBP22.63■■□□□ 1.21
CLN3-206ENST00000360019 WTIPA6NIX2 430 aaPredicted RBP22.63■■□□□ 1.21
CLN3-206ENST00000360019 IFIT1P09914 478 aaKnown RBP22.63■■□□□ 1.21
CLN3-206ENST00000360019 SRGNP10124 158 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 SCARF1Q14162 830 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 CCDC102BQ68D86 513 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 SLC16A10Q8TF71 515 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 CRAMP1Q96RY5 1269 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 UPF2Q9HAU5 1272 aaKnown RBP22.61■■□□□ 1.21
CLN3-206ENST00000360019 COL11A2P13942 1736 aaPredicted RBP22.61■■□□□ 1.21
CLN3-206ENST00000360019 PDE6BP35913 854 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 PHKA1P46020 1223 aa22.61■■□□□ 1.21
CLN3-206ENST00000360019 ZNF512BQ96KM6 892 aaPredicted RBP22.61■■□□□ 1.21
CLN3-206ENST00000360019 UBE4AQ14139 1066 aa22.6■■□□□ 1.21
CLN3-206ENST00000360019 ESYT1Q9BSJ8 1104 aa22.6■■□□□ 1.21
CLN3-206ENST00000360019 ANKRD2Q9GZV1 360 aa22.6■■□□□ 1.21
CLN3-206ENST00000360019 IL25Q9H293 177 aa22.59■■□□□ 1.21
CLN3-206ENST00000360019 ARID4AP29374 1257 aaPredicted RBP22.59■■□□□ 1.21
CLN3-206ENST00000360019 TBC1D32Q96NH3 1257 aa22.59■■□□□ 1.21
CLN3-206ENST00000360019 FSD1Q9BTV5 496 aa22.59■■□□□ 1.21
CLN3-206ENST00000360019 PAG1Q9NWQ8 432 aa22.59■■□□□ 1.21
CLN3-206ENST00000360019 GOLIM4O00461 696 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 BBOX1O75936 387 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 NPR1P16066 1061 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 MCAMP43121 646 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 PI16Q6UXB8 463 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 SNRKQ9NRH2 765 aa22.58■■□□□ 1.21
CLN3-206ENST00000360019 AKAP11Q9UKA4 1901 aa22.58■■□□□ 1.2
CLN3-206ENST00000360019 BCAMP50895 628 aa22.57■■□□□ 1.2
CLN3-206ENST00000360019 ANTXR1Q9H6X2 564 aa22.57■■□□□ 1.2
CLN3-206ENST00000360019 ZAP70P43403 619 aa22.56■■□□□ 1.2
CLN3-206ENST00000360019 FKBP4Q02790 459 aaKnown RBP eCLIP22.56■■□□□ 1.2
CLN3-206ENST00000360019 CWC27Q6UX04 472 aaKnown RBP22.56■■□□□ 1.2
CLN3-206ENST00000360019 KBTBD3Q8NAB2 608 aa22.56■■□□□ 1.2
CLN3-206ENST00000360019 C22orf23Q9BZE7 217 aa22.56■■□□□ 1.2
CLN3-206ENST00000360019 DIAPH3Q9NSV4 1193 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms