RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ABCA10Q8WWZ4 1543 aa17.83■□□□□ 0.45
PTPRF-201ENST00000359947 TAF12Q16514 161 aa17.83■□□□□ 0.45
PTPRF-201ENST00000359947 ARL1P40616 181 aaPredicted RBP17.83■□□□□ 0.45
PTPRF-201ENST00000359947 NCBP1Q09161 790 aaKnown RBP17.83■□□□□ 0.45
PTPRF-201ENST00000359947 HOMER2Q9NSB8 354 aa17.83■□□□□ 0.45
PTPRF-201ENST00000359947 RIMS2Q9UQ26 1411 aa17.83■□□□□ 0.44
PTPRF-201ENST00000359947 GJC1P36383 396 aa17.83■□□□□ 0.44
PTPRF-201ENST00000359947 ZYXQ15942 572 aaKnown RBP17.83■□□□□ 0.44
PTPRF-201ENST00000359947 MRVI1Q9Y6F6 885 aa17.83■□□□□ 0.44
PTPRF-201ENST00000359947 MTHFSDQ2M296 383 aaKnown RBP17.83■□□□□ 0.44
PTPRF-201ENST00000359947 DDX17Q92841 729 aaKnown RBP17.83■□□□□ 0.44
PTPRF-201ENST00000359947 PAFAH1B1P43034 410 aa17.83■□□□□ 0.44
PTPRF-201ENST00000359947 KSR2Q6VAB6 950 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 CNBD1Q8NA66 436 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 TNNI2P48788 182 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 C6orf50Q9HD87 102 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 PAG1Q9NWQ8 432 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 RRAGBQ5VZM2 374 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 EIF6P56537 245 aaKnown RBP17.82■□□□□ 0.44
PTPRF-201ENST00000359947 C8orf58Q8NAV2 365 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 RXRAP19793 462 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 MARCKSP29966 332 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-201ENST00000359947 EYA3Q99504 573 aa17.82■□□□□ 0.44
PTPRF-201ENST00000359947 ERICH4A6NGS2 130 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 MCMDC2Q4G0Z9 681 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 SPECC1Q5M775 1068 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 Q6ZUG5 572 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 LRSAM1Q6UWE0 723 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 ASXL2Q76L83 1435 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 BACH1O14867 736 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 GCP02774 474 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 ZKSCAN3Q9BRR0 538 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 TBC1D5Q92609 795 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 SSX2IPQ9Y2D8 614 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 UFL1O94874 794 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 CCDC102BQ68D86 513 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 FAM114A1Q8IWE2 563 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 IL15P40933 162 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-201ENST00000359947 ARID5AQ03989 594 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 OTUD6BQ8N6M0 293 aa17.81■□□□□ 0.44
PTPRF-201ENST00000359947 EAPPQ56P03 285 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-201ENST00000359947 TTC22Q5TAA0 569 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 CNNM2Q9H8M5 875 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 RRP36Q96EU6 259 aaKnown RBP17.8■□□□□ 0.44
PTPRF-201ENST00000359947 PLIN2Q99541 437 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 PICK1Q9NRD5 415 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 KRT13P13646 458 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 FERMT1Q9BQL6 677 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 HMG20BQ9P0W2 317 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 CTAGE5O15320 804 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 HCLS1P14317 486 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-201ENST00000359947 GRIPAP1Q4V328 841 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 TMCO3Q6UWJ1 677 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 JADE2Q9NQC1 790 aa17.8■□□□□ 0.44
PTPRF-201ENST00000359947 ALS2CR12Q96Q35 445 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 USP25Q9UHP3 1055 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 ACTN2P35609 894 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 TFCP2Q12800 502 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 CCDC66A2RUB6 948 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 ZFYP08048 801 aaPredicted RBP17.79■□□□□ 0.44
PTPRF-201ENST00000359947 BEGAINQ9BUH8 593 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 TMEM110-MUSTN1A8MSY1 372 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 NOD1Q9Y239 953 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 SYKP43405 635 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 FAM89AQ96GI7 184 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 RBM8AQ9Y5S9 174 aaKnown RBP17.79■□□□□ 0.44
PTPRF-201ENST00000359947 KRT24Q2M2I5 525 aa17.79■□□□□ 0.44
PTPRF-201ENST00000359947 MTERF4Q7Z6M4 381 aaKnown RBP17.79■□□□□ 0.44
PTPRF-201ENST00000359947 RBM25P49756 843 aaKnown RBP17.78■□□□□ 0.44
PTPRF-201ENST00000359947 LRRC27Q9C0I9 530 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 ANKRD36BQ8N2N9 1353 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 GINS2Q9Y248 185 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 NSD2O96028 1365 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 N4BP3O15049 544 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 ASIC1P78348 528 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 STX1AQ16623 288 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 RBM27Q9P2N5 1060 aaKnown RBP17.78■□□□□ 0.44
PTPRF-201ENST00000359947 TEX14Q8IWB6 1497 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 B4DLN1 442 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 KCNA6P17658 529 aa17.78■□□□□ 0.44
PTPRF-201ENST00000359947 MRPL12P52815 198 aaKnown RBP17.78■□□□□ 0.44
PTPRF-201ENST00000359947 PLEKHH1Q9ULM0 1364 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 APBA3O96018 575 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 HARSP12081 509 aaKnown RBP17.77■□□□□ 0.44
PTPRF-201ENST00000359947 MCM7P33993 719 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 MSL1Q68DK7 614 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 GPCPD1Q9NPB8 672 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 SDSP20132 328 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 TMTC2Q8N394 836 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 INCENPQ9NQS7 918 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 STAMBPO95630 424 aa17.77■□□□□ 0.44
PTPRF-201ENST00000359947 CFAP65Q6ZU64 1925 aaKnown RBP17.77■□□□□ 0.43
PTPRF-201ENST00000359947 TAOK3Q9H2K8 898 aa17.77■□□□□ 0.43
PTPRF-201ENST00000359947 PCDH11XQ9BZA7 1347 aa17.77■□□□□ 0.43
PTPRF-201ENST00000359947 PCDH11YQ9BZA8 1340 aa17.77■□□□□ 0.43
PTPRF-201ENST00000359947 NMIQ13287 307 aaPredicted RBP17.77■□□□□ 0.43
PTPRF-201ENST00000359947 SERPINA10Q9UK55 444 aa17.77■□□□□ 0.43
PTPRF-201ENST00000359947 IGHDP01880 384 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 PPP4R3BQ5MIZ7 849 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 SPAG5Q96R06 1193 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms