RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 TTC14Q96N46 770 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 URI1O94763 535 aaPredicted RBP18.29■□□□□ 0.52
RTN3-205ENST00000356000 PDE1AP54750 535 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 NBPF6Q5VWK0 638 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 TRIM65Q6PJ69 517 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 HOMER1Q86YM7 354 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 NBPF4Q96M43 638 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 PDE11AQ9HCR9 933 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 GNL3LQ9NVN8 582 aaKnown RBP18.29■□□□□ 0.52
RTN3-205ENST00000356000 BSDC1Q9NW68 430 aaPredicted RBP18.29■□□□□ 0.52
RTN3-205ENST00000356000 PARP3Q9Y6F1 533 aa18.29■□□□□ 0.52
RTN3-205ENST00000356000 RABGGTAQ92696 567 aa18.28■□□□□ 0.52
RTN3-205ENST00000356000 TTC21AQ8NDW8 1320 aa18.28■□□□□ 0.52
RTN3-205ENST00000356000 C19orf44Q9H6X5 657 aa18.28■□□□□ 0.52
RTN3-205ENST00000356000 LIMCH1Q9UPQ0 1083 aa18.28■□□□□ 0.52
RTN3-205ENST00000356000 KIAA1210Q9ULL0 1709 aa18.28■□□□□ 0.52
RTN3-205ENST00000356000 CCP110O43303 1012 aa18.27■□□□□ 0.52
RTN3-205ENST00000356000 BRD3Q15059 726 aa18.27■□□□□ 0.52
RTN3-205ENST00000356000 NBPF9Q3BBW0 867 aa18.27■□□□□ 0.52
RTN3-205ENST00000356000 NBPF11Q86T75 865 aa18.27■□□□□ 0.52
RTN3-205ENST00000356000 CCDC150Q8NCX0 1101 aa18.27■□□□□ 0.52
RTN3-205ENST00000356000 API5Q9BZZ5 524 aaKnown RBP18.27■□□□□ 0.52
RTN3-205ENST00000356000 FANCGO15287 622 aa18.27■□□□□ 0.51
RTN3-205ENST00000356000 GJB2P29033 226 aa18.27■□□□□ 0.51
RTN3-205ENST00000356000 HSPA4P34932 840 aa18.27■□□□□ 0.51
RTN3-205ENST00000356000 NPHP3Q7Z494 1330 aa18.27■□□□□ 0.51
RTN3-205ENST00000356000 CHMLP26374 656 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 GIMAP7Q8NHV1 300 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 PLCD4Q9BRC7 762 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 FAN1Q9Y2M0 1017 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 AK2P54819 239 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 GNAI1P63096 354 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 CEP85Q6P2H3 762 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 GBP6Q6ZN66 633 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 C11orf57Q6ZUT1 292 aaPredicted RBP18.26■□□□□ 0.51
RTN3-205ENST00000356000 RUFY3Q7L099 469 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 TUBGCP6Q96RT7 1819 aa18.26■□□□□ 0.51
RTN3-205ENST00000356000 NHSL1Q5SYE7 1610 aa18.25■□□□□ 0.51
RTN3-205ENST00000356000 INHBEP58166 350 aa18.25■□□□□ 0.51
RTN3-205ENST00000356000 HNRNPLLQ8WVV9 542 aaKnown RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 TRAK1Q9UPV9 953 aa18.25■□□□□ 0.51
RTN3-205ENST00000356000 H0YHG0 523 aa18.25■□□□□ 0.51
RTN3-205ENST00000356000 SETD1AO15047 1707 aaKnown RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 SSR1P43307 286 aaKnown RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 SARNPP82979 210 aaKnown RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 VPS53Q5VIR6 699 aa18.25■□□□□ 0.51
RTN3-205ENST00000356000 ZNF772Q68DY9 489 aaPredicted RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 CALR3Q96L12 384 aaKnown RBP18.25■□□□□ 0.51
RTN3-205ENST00000356000 APBB1O00213 710 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 EIF3JO75822 258 aaKnown RBP18.24■□□□□ 0.51
RTN3-205ENST00000356000 ERCC3P19447 782 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 DHX8Q14562 1220 aaKnown RBP18.24■□□□□ 0.51
RTN3-205ENST00000356000 ZKSCAN8Q15776 578 aaPredicted RBP18.24■□□□□ 0.51
RTN3-205ENST00000356000 ARMCX5Q6P1M9 558 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 GOLGA6L4A6NEF3 574 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 ELF1P32519 619 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 HDXQ7Z353 690 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 SBNO2Q9Y2G9 1366 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 NRXN3Q9Y4C0 1643 aa18.24■□□□□ 0.51
RTN3-205ENST00000356000 NR1I2O75469 434 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 ATF3P18847 181 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 IRX1P78414 480 aaPredicted RBP18.23■□□□□ 0.51
RTN3-205ENST00000356000 GNL2Q13823 731 aaKnown RBP18.23■□□□□ 0.51
RTN3-205ENST00000356000 CNNM3Q8NE01 707 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 NRDCO43847 1150 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 MAP3K9P80192 1104 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 NEDD9Q14511 834 aa18.23■□□□□ 0.51
RTN3-205ENST00000356000 SCAND2PQ9GZW5 306 aaPredicted RBP18.23■□□□□ 0.51
RTN3-205ENST00000356000 VPS37CA5D8V6 355 aaPredicted RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 BECN2A8MW95 431 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 EXOC5O00471 708 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 N4BP1O75113 896 aaKnown RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 TXLNAP40222 546 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 BEND6Q5SZJ8 279 aaPredicted RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 DHX40Q8IX18 779 aaKnown RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 RGS17Q9UGC6 210 aaPredicted RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 ANKRD33BA6NCL7 494 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 SFPQP23246 707 aaKnown RBP eCLIP18.22■□□□□ 0.51
RTN3-205ENST00000356000 GPTP24298 496 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 LIG3P49916 1009 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 DDR1Q08345 913 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 MCM6Q14566 821 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 STX1AQ16623 288 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 FBXW10Q5XX13 1052 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 CPLX2Q6PUV4 134 aaKnown RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 FAM71BQ8TC56 605 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 PLEKHA4Q9H4M7 779 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 BICC1Q9H694 974 aaKnown RBP18.22■□□□□ 0.51
RTN3-205ENST00000356000 KIF1BO60333 1816 aa18.22■□□□□ 0.51
RTN3-205ENST00000356000 PPP2R3AQ06190 1150 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 PSME1Q06323 249 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 MPHOSPH8Q99549 860 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 JPH2Q9BR39 696 aaPredicted RBP18.21■□□□□ 0.51
RTN3-205ENST00000356000 MCM8Q9UJA3 840 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.21■□□□□ 0.51
RTN3-205ENST00000356000 RPGRIP1LQ68CZ1 1315 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 SCRN1Q12765 414 aa18.21■□□□□ 0.51
RTN3-205ENST00000356000 SETQ01105 290 aaPredicted RBP18.2■□□□□ 0.5
RTN3-205ENST00000356000 NAIF1Q69YI7 327 aaPredicted RBP18.2■□□□□ 0.5
RTN3-205ENST00000356000 TSPYL6Q8N831 410 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms