RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TPM3P06753 285 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 DUSP27Q5VZP5 1158 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 USP19O94966 1318 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 ATP2B3Q16720 1220 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 KIF4BQ2VIQ3 1234 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 SYT17Q9BSW7 474 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 RNF208Q9H0X6 261 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 VAT1LQ9HCJ6 419 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 IARSP41252 1262 aaKnown RBP9.84□□□□□ -0.83
HMGB1-203ENST00000341423 KCNQ4P56696 695 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 CLRN2A0PK11 232 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 IPO7O95373 1038 aaKnown RBP9.83□□□□□ -0.84
HMGB1-203ENST00000341423 MFSD14BQ5SR56 506 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 AACSQ86V21 672 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 YAF2Q8IY57 180 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 DNAAF4Q8WXU2 420 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 DDX19BQ9UMR2 479 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 REC8O95072 547 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 DPEP1P16444 411 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 TTC30AQ86WT1 665 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 BICD1Q96G01 975 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 HOMER2Q9NSB8 354 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 A2ML1A8K2U0 1454 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 NPATQ14207 1427 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 RNASELQ05823 741 aaKnown RBP9.83□□□□□ -0.84
HMGB1-203ENST00000341423 HSP90AB2PQ58FF8 381 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 HSCBQ8IWL3 235 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 MAP7D2Q96T17 732 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 DBNDD1Q9H9R9 158 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 PIK3C2GO75747 1445 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 USP17L3A6NCW0 530 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 USP17L4A6NCW7 530 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 NBPF10Q6P3W6 841 aaKnown RBP9.83□□□□□ -0.84
HMGB1-203ENST00000341423 LMBR1LQ6UX01 489 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 USP17L1Q7RTZ2 530 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 RDH13Q8NBN7 331 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 FBXL21Q9UKT6 434 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 JAG2Q9Y219 1238 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 NCOA1Q15788 1441 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 A0A0U1RQG5 324 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-203ENST00000341423 RAG1P15918 1043 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 ZNF354CQ86Y25 554 aa9.83□□□□□ -0.84
HMGB1-203ENST00000341423 PRXQ9BXM0 1461 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 MLXIPQ9HAP2 919 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 LDHDQ86WU2 507 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 MIS18AQ9NYP9 233 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 CETPP11597 493 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 SNAPC2Q13487 334 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 SLITRK6Q9H5Y7 841 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 ADD3Q9UEY8 706 aaKnown RBP9.82□□□□□ -0.84
HMGB1-203ENST00000341423 BLMP54132 1417 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-203ENST00000341423 MANSC4A6NHS7 340 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-203ENST00000341423 SPDYE3A6NKU9 549 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 PSMA5P28066 241 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 OTUD5Q96G74 571 aa9.82□□□□□ -0.84
HMGB1-203ENST00000341423 PDE8AO60658 829 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 DKC1O60832 514 aaKnown RBP eCLIP9.81□□□□□ -0.84
HMGB1-203ENST00000341423 KDM4AO75164 1064 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 INF2Q27J81 1249 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 GNPTABQ3T906 1256 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 NUDT18Q6ZVK8 323 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 HOXC9P31274 260 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 USP40Q9NVE5 1235 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 ZNRF3Q9ULT6 936 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 PLEKHG3A1L390 1219 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 PDE4DQ08499 809 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 IMMTQ16891 758 aaKnown RBP9.81□□□□□ -0.84
HMGB1-203ENST00000341423 ZNF341Q9BYN7 854 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 C6orf50Q9HD87 102 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 ADARB2Q9NS39 739 aaKnown RBP9.81□□□□□ -0.84
HMGB1-203ENST00000341423 CNOT7Q9UIV1 285 aaKnown RBP9.81□□□□□ -0.84
HMGB1-203ENST00000341423 CCDC196A0A1B0GTZ2 297 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 TBC1D8O95759 1140 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 GLG1Q92896 1179 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 ADGRL3Q9HAR2 1447 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 RALGAPBQ86X10 1494 aa9.81□□□□□ -0.84
HMGB1-203ENST00000341423 CHURC1Q8WUH1 139 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 POLR3AO14802 1390 aaPredicted RBP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 NOLC1Q14978 699 aaKnown RBP eCLIP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 TMEM266Q2M3C6 531 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 ORC3Q9UBD5 711 aaPredicted RBP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 ABCA8O94911 1581 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 KIF21AQ7Z4S6 1674 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 ZSCAN20P17040 1043 aaPredicted RBP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 MAP1SQ66K74 1059 aaPredicted RBP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 BRIP1Q9BX63 1249 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 MCM9Q9NXL9 1143 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 KIAA0556O60303 1618 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 HSPA6P17066 643 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 NBPF9Q3BBW0 867 aa9.8□□□□□ -0.84
HMGB1-203ENST00000341423 HELBQ8NG08 1087 aaPredicted RBP9.8□□□□□ -0.84
HMGB1-203ENST00000341423 CCL15-CCL14A0A0B4J2E2 113 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 CCL15Q16663 113 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 STXBP4Q6ZWJ1 553 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 ELMOD1Q8N336 334 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 UGGT2Q9NYU1 1516 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 FLOT1O75955 427 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 CDKL5O76039 1030 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 RARSP54136 660 aaKnown RBP9.79□□□□□ -0.84
HMGB1-203ENST00000341423 INHBEP58166 350 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms