RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ARHGEF5Q12774 1597 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 MAP3K5Q99683 1374 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 MYO5CQ9NQX4 1742 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 TYRO3Q06418 890 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 SF3B2Q13435 895 aaKnown RBP13.19□□□□□ -0.3
VPS39-201ENST00000318006 LINS1Q8NG48 757 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 NEK1Q96PY6 1258 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 ESYT1Q9BSJ8 1104 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 DNAJC25Q9H1X3 360 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 GOLGA8BA8MQT2 603 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 SSBP05455 408 aaKnown RBP eCLIP13.19□□□□□ -0.3
VPS39-201ENST00000318006 VPS36Q86VN1 386 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 IQCA1Q86XH1 822 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 C16orf71Q8IYS4 520 aaPredicted RBP13.19□□□□□ -0.3
VPS39-201ENST00000318006 RBSNQ9H1K0 784 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 VPS18Q9P253 973 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 SLC12A7Q9Y666 1083 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 OPA1O60313 960 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 F13A1P00488 732 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 DZIP1Q86YF9 867 aaKnown RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 NGLY1Q96IV0 654 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 C19orf44Q9H6X5 657 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 GOPCQ9HD26 462 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 JADE2Q9NQC1 790 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 GCP02774 474 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 CCT2P78371 535 aaKnown RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 PHF23Q9BUL5 403 aaPredicted RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 MKNK2Q9HBH9 465 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 ANKIB1Q9P2G1 1089 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 TTC37Q6PGP7 1564 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 IFIT3O14879 490 aaKnown RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 DNA2P51530 1060 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 CCDC102BQ68D86 513 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 CTCFLQ8NI51 663 aaPredicted RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 CDC5LQ99459 802 aaKnown RBP13.18□□□□□ -0.3
VPS39-201ENST00000318006 HOXC9P31274 260 aa13.18□□□□□ -0.3
VPS39-201ENST00000318006 POLR3DP05423 398 aaPredicted RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 TUBBP07437 444 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 EDC4Q6P2E9 1401 aaKnown RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 RANBP6O60518 1105 aaKnown RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 FGFR1OPO95684 399 aaKnown RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 U2AF2P26368 475 aaKnown RBP eCLIP13.17□□□□□ -0.31e-6■□□□□ 10.5
VPS39-201ENST00000318006 OTUD6BQ8N6M0 293 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 ATP10AO60312 1499 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 SEC24BO95487 1268 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 SYT1P21579 422 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 IL13P35225 146 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 TDRD12Q587J7 1177 aaKnown RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 DDX46Q7L014 1031 aaKnown RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 GTF3C6Q969F1 213 aa13.17□□□□□ -0.3
VPS39-201ENST00000318006 SOS1Q07889 1333 aaPredicted RBP13.17□□□□□ -0.3
VPS39-201ENST00000318006 IP6K1Q92551 441 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 GOLGA8AA7E2F4 631 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 LMBR1LQ6UX01 489 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 KRBA2Q6ZNG9 492 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 ATRIPQ8WXE1 791 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 INSRP06213 1382 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 RIOK3O14730 519 aaKnown RBP13.16□□□□□ -0.3
VPS39-201ENST00000318006 CCDC82Q8N4S0 544 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 AOPEPQ8N6M6 819 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 RNF216Q9NWF9 866 aaPredicted RBP13.16□□□□□ -0.3
VPS39-201ENST00000318006 ATP2C2O75185 946 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 CETN2P41208 172 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 ZNF445P59923 1031 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 GBP6Q6ZN66 633 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 PPP1R1BQ9UD71 204 aaPredicted RBP13.16□□□□□ -0.3
VPS39-201ENST00000318006 PTPRTO14522 1441 aa13.16□□□□□ -0.3
VPS39-201ENST00000318006 MATR3P43243 847 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS39-201ENST00000318006 DNM1Q05193 864 aaKnown RBP13.15□□□□□ -0.3
VPS39-201ENST00000318006 TSG101Q99816 390 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 TAOK3Q9H2K8 898 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 USP16Q9Y5T5 823 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 ISM2Q6H9L7 571 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 SYT10Q6XYQ8 523 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 CEP57Q86XR8 500 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 NFATC2IPQ8NCF5 419 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 ZMYM4Q5VZL5 1548 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 GSTTP1A0A1W2PQM5 241 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 ZBTB7BO15156 539 aaPredicted RBP13.15□□□□□ -0.3
VPS39-201ENST00000318006 HAND2P61296 217 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 CFAP65Q6ZU64 1925 aaKnown RBP13.15□□□□□ -0.3
VPS39-201ENST00000318006 UQCRFS1P1P0C7P4 283 aa13.15□□□□□ -0.3
VPS39-201ENST00000318006 CTAGE9A4FU28 777 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 IL15P40933 162 aaPredicted RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 SSRP1Q08945 709 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 MSL1Q68DK7 614 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 INTS4Q96HW7 963 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.14□□□□□ -0.313e-7■□□□□ 10.8
VPS39-201ENST00000318006 ZFYP08048 801 aaPredicted RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 CCDC121Q6ZUS5 278 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 NCOA7Q8NI08 942 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 MRPS27Q92552 414 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 SPATA31E1Q6ZUB1 1445 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 N4BP3O15049 544 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 PLEKHM2Q8IWE5 1019 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 TMOD2Q9NZR1 351 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 SEC63Q9UGP8 760 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 TRIM35Q9UPQ4 493 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms