RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 PHACTR3Q96KR7 559 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 SEPT6Q14141 434 aa17.52■□□□□ 0.39
LEMD3-201ENST00000308330 SDF4Q9BRK5 362 aa17.51■□□□□ 0.39
LEMD3-201ENST00000308330 MAGI3Q5TCQ9 1506 aa17.51■□□□□ 0.39
LEMD3-201ENST00000308330 PTPRCP08575 1304 aa17.51■□□□□ 0.39
LEMD3-201ENST00000308330 CDCA7Q9BWT1 371 aaPredicted RBP17.51■□□□□ 0.39
LEMD3-201ENST00000308330 NIP7Q9Y221 180 aaKnown RBP eCLIP17.51■□□□□ 0.39
LEMD3-201ENST00000308330 TSPOAP1O95153 1857 aa17.51■□□□□ 0.39
LEMD3-201ENST00000308330 FAM43BQ6ZT52 329 aaPredicted RBP17.51■□□□□ 0.39
LEMD3-201ENST00000308330 ZMAT2Q96NC0 199 aaKnown RBP17.51■□□□□ 0.39
LEMD3-201ENST00000308330 PDRG1Q9NUG6 133 aa17.51■□□□□ 0.39
LEMD3-201ENST00000308330 HOOK1Q9UJC3 728 aaKnown RBP17.51■□□□□ 0.39
LEMD3-201ENST00000308330 SMARCA5O60264 1052 aaPredicted RBP17.5■□□□□ 0.39
LEMD3-201ENST00000308330 GLRX3O76003 335 aaKnown RBP17.5■□□□□ 0.39
LEMD3-201ENST00000308330 CCDC121Q6ZUS5 278 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 TAX1BP1Q86VP1 789 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 NLRP3Q96P20 1036 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 CHD1O14646 1710 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 FRMD3A2A2Y4 597 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 SLC5A1P13866 664 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 ZNF445P59923 1031 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 ARMC2Q8NEN0 867 aa17.5■□□□□ 0.39
LEMD3-201ENST00000308330 JPH2Q9BR39 696 aaPredicted RBP17.5■□□□□ 0.39
LEMD3-201ENST00000308330 PLEKHG3A1L390 1219 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 ST5P78524 1137 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 ERCC6L2Q5T890 1561 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 PHACTR2O75167 634 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 RAB3GAP1Q15042 981 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 C20orf194Q5TEA3 1177 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 PIK3R4Q99570 1358 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 IL16Q14005 1332 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 SSBP05455 408 aaKnown RBP eCLIP17.49■□□□□ 0.39
LEMD3-201ENST00000308330 RAB11FIP3O75154 756 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 B4GALNT4Q76KP1 1039 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 CCDC47Q96A33 483 aaKnown RBP17.49■□□□□ 0.39
LEMD3-201ENST00000308330 CTNNA3Q9UI47 895 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 ASXL1Q8IXJ9 1541 aa17.49■□□□□ 0.39
LEMD3-201ENST00000308330 TUBB4AP04350 444 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 WHAMMQ8TF30 809 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 MAGI2Q86UL8 1455 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 KINO60870 393 aaKnown RBP17.48■□□□□ 0.39
LEMD3-201ENST00000308330 GSDMDP57764 484 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 CEP85LQ5SZL2 805 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 ARHGEF10O15013 1369 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 PCDH11XQ9BZA7 1347 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 PCDH11YQ9BZA8 1340 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 LIG3P49916 1009 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 DZIP3Q86Y13 1208 aaKnown RBP17.48■□□□□ 0.39
LEMD3-201ENST00000308330 C8orf58Q8NAV2 365 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 CFAP45Q9UL16 551 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 ATP2C2O75185 946 aa17.48■□□□□ 0.39
LEMD3-201ENST00000308330 A0A087WUV0 522 aaPredicted RBP17.47■□□□□ 0.39
LEMD3-201ENST00000308330 MAST1Q9Y2H9 1570 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 USP5P45974 858 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 CYP46A1Q9Y6A2 500 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 NKTRP30414 1462 aaKnown RBP17.47■□□□□ 0.39
LEMD3-201ENST00000308330 MX1P20591 662 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 MAP3K12Q12852 859 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 UBAC1Q9BSL1 405 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 MLH3Q9UHC1 1453 aa17.47■□□□□ 0.39
LEMD3-201ENST00000308330 BUB1BO60566 1050 aaPredicted RBP17.46■□□□□ 0.39
LEMD3-201ENST00000308330 ANAPC4Q9UJX5 808 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 MINDY4BA8MYZ0 360 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 SKILP12757 684 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 BRPF1P55201 1214 aaPredicted RBP17.46■□□□□ 0.39
LEMD3-201ENST00000308330 IQCEQ6IPM2 695 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 GAS2L3Q86XJ1 694 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 RANBP1P43487 201 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 SYCP1Q15431 976 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 TPTE2Q6XPS3 522 aa17.46■□□□□ 0.39
LEMD3-201ENST00000308330 CRACR2BQ8N4Y2 399 aaPredicted RBP17.46■□□□□ 0.39
LEMD3-201ENST00000308330 GRIPAP1Q4V328 841 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 SNRKQ9NRH2 765 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 GNPATO15228 680 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 SERPINC1P01008 464 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 POLR3DP05423 398 aaPredicted RBP17.45■□□□□ 0.38
LEMD3-201ENST00000308330 SMC1AQ14683 1233 aaKnown RBP17.45■□□□□ 0.38
LEMD3-201ENST00000308330 CCDC152Q4G0S7 254 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 SAAL1Q96ER3 474 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 PLEKHH1Q9ULM0 1364 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 RNMTO43148 476 aaKnown RBP17.45■□□□□ 0.38
LEMD3-201ENST00000308330 ARHGAP25P42331 645 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 KRT24Q2M2I5 525 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 DDX41Q9UJV9 622 aaKnown RBP17.45■□□□□ 0.38
LEMD3-201ENST00000308330 CAPN7Q9Y6W3 813 aa17.45■□□□□ 0.38
LEMD3-201ENST00000308330 CCNL1Q9UK58 526 aaPredicted RBP17.45■□□□□ 0.38
LEMD3-201ENST00000308330 ACTN2P35609 894 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 BLOC1S2Q6QNY1 142 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 TRIM4Q9C037 500 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 ZNF335Q9H4Z2 1342 aaPredicted RBP17.44■□□□□ 0.38
LEMD3-201ENST00000308330 PTGS1P23219 599 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 SEMA3FQ13275 785 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 CEP57L1Q8IYX8 460 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 STK3Q13188 491 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 HDXQ7Z353 690 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 DNAI1Q9UI46 699 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 KIF4BQ2VIQ3 1234 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 KSR2Q6VAB6 950 aa17.44■□□□□ 0.38
LEMD3-201ENST00000308330 POLR3AO14802 1390 aaPredicted RBP17.44■□□□□ 0.38
LEMD3-201ENST00000308330 CCDC69A6NI79 296 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms