RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 GOLGA8BA8MQT2 603 aa11.27□□□□□ -0.6
COL6A3-201ENST00000295550 MPRIPQ6WCQ1 1025 aa11.27□□□□□ -0.6
COL6A3-201ENST00000295550 USP48Q86UV5 1035 aa11.27□□□□□ -0.6
COL6A3-201ENST00000295550 ZSWIM4Q9H7M6 989 aa11.27□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC155Q8N6L0 562 aa11.27□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC94Q9BW85 323 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-201ENST00000295550 MPHOSPH10O00566 681 aaKnown RBP11.27□□□□□ -0.61
COL6A3-201ENST00000295550 F13A1P00488 732 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 CKAP4Q07065 602 aaKnown RBP11.27□□□□□ -0.61
COL6A3-201ENST00000295550 MCM6Q14566 821 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC96Q2M329 555 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 APBB1IPQ7Z5R6 666 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-201ENST00000295550 FAM200AQ8TCP9 573 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 GDPD2Q9HCC8 539 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 RASAL2Q9UJF2 1139 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 ALDH1L1O75891 902 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 ZKSCAN5Q9Y2L8 839 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 DDX12PQ92771 950 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 STMN4Q9H169 189 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-201ENST00000295550 ARAP3Q8WWN8 1544 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 TRIM35Q9UPQ4 493 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 PSMD1Q99460 953 aa11.27□□□□□ -0.61
COL6A3-201ENST00000295550 FSIP1Q8NA03 581 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 PHACTR3Q96KR7 559 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 ARHGEF10O15013 1369 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 KIAA1210Q9ULL0 1709 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 FAM177BA6PVY3 158 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 DDX46Q7L014 1031 aaKnown RBP11.26□□□□□ -0.61
COL6A3-201ENST00000295550 CHPF2Q9P2E5 772 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 HCLS1P14317 486 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-201ENST00000295550 NAA25Q14CX7 972 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 TNIP1Q15025 636 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 GBP6Q6ZN66 633 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 DMRT2Q9Y5R5 561 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 GNG11P61952 73 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 PI4KAP2A4QPH2 592 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 PI4KAP1Q8N8J0 262 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 MIPOL1Q8TD10 442 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 UGGT1Q9NYU2 1555 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 ABCA6Q8N139 1617 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 CPLX3Q8WVH0 158 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 ANAPC4Q9UJX5 808 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 ZNF521Q96K83 1311 aa11.26□□□□□ -0.61
COL6A3-201ENST00000295550 CAPN2P17655 700 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 ATP7BP35670 1465 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 MICALL1Q8N3F8 863 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 TSPYL6Q8N831 410 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC196A0A1B0GTZ2 297 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 NOP2P46087 812 aaKnown RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 IQCGQ9H095 443 aaKnown RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 SSH2Q76I76 1423 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 V9GYY5 206 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 RAD50Q92878 1312 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 ZBTB7BO15156 539 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 USP5P45974 858 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 CTAGE9A4FU28 777 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 MTIF2P46199 727 aaKnown RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 KIAA0232Q92628 1395 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 ZNF165P49910 485 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 PPP4R3AQ6IN85 833 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 TRMT2AQ8IZ69 625 aaKnown RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC8Q9H0W5 538 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-201ENST00000295550 PRDM11Q9NQV5 511 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 SBNO1A3KN83 1393 aa11.25□□□□□ -0.61
COL6A3-201ENST00000295550 BIN1O00499 593 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 KIF3CO14782 793 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 IFIT1P09914 478 aaKnown RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 PRIM1P49642 420 aaKnown RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 STRN4Q9NRL3 753 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 OPA1O60313 960 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 METTL24Q5JXM2 366 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 ZBTB16Q05516 673 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 ATRIPQ8WXE1 791 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 RNF216Q9NWF9 866 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 SWAP70Q9UH65 585 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 ABCC4O15439 1325 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 RBM5P52756 815 aaKnown RBP eCLIP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 SMC6Q96SB8 1091 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 RNF17Q9BXT8 1623 aaKnown RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 STARD3NLO95772 234 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 TTF1Q15361 905 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 SPTY2D1Q68D10 685 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 TTC14Q96N46 770 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 FBLN1P23142 703 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 GLI2P10070 1586 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 SETBP1Q9Y6X0 1596 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 EBAG9O00559 213 aa11.24□□□□□ -0.61
COL6A3-201ENST00000295550 IDH1O75874 414 aaKnown RBP11.24□□□□□ -0.61
COL6A3-201ENST00000295550 IQGAP1P46940 1657 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 TMEM266Q2M3C6 531 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 CFAP58Q5T655 872 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 CNNM3Q8NE01 707 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 CETN1Q12798 172 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 NEK1Q96PY6 1258 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 CHMLP26374 656 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 DDX54Q8TDD1 881 aaKnown RBP11.23□□□□□ -0.61
COL6A3-201ENST00000295550 IFIT5Q13325 482 aaKnown RBP11.23□□□□□ -0.61
COL6A3-201ENST00000295550 SETSIPP0DME0 302 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 RAB34Q9BZG1 259 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms