RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ATP2B3Q16720 1220 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 MCMDC2Q4G0Z9 681 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 TTC39AQ5SRH9 613 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 RASEFQ8IZ41 740 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 TMX3Q96JJ7 454 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 UPF3BQ9BZI7 483 aaKnown RBP18.38■□□□□ 0.53
SF3B4-201ENST00000271628 RBM8AQ9Y5S9 174 aaKnown RBP18.38■□□□□ 0.53
SF3B4-201ENST00000271628 MROH5Q6ZUA9 1318 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 GOLGA6L3A6NEY3 463 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 GOLIM4O00461 696 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 RPS6KA4O75676 772 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 PDE8BO95263 885 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 NUCB2P80303 420 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 CCDC152Q4G0S7 254 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 PRPF40BQ6NWY9 871 aaKnown RBP18.37■□□□□ 0.53
SF3B4-201ENST00000271628 FAM43AQ8N2R8 423 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 NDUFB9Q9Y6M9 179 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 FSD2A1L4K1 749 aa18.37■□□□□ 0.53
SF3B4-201ENST00000271628 HCLS1P14317 486 aaPredicted RBP18.37■□□□□ 0.53
SF3B4-201ENST00000271628 INTS4Q96HW7 963 aaKnown RBP18.37■□□□□ 0.53
SF3B4-201ENST00000271628 RIC1Q4ADV7 1423 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 FAM177BA6PVY3 158 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 PTMSP20962 102 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 CUL4AQ13619 759 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 PTF1AQ7RTS3 328 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 HELLSQ9NRZ9 838 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 HMG20BQ9P0W2 317 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 CCNL1Q9UK58 526 aaPredicted RBP18.36■□□□□ 0.53
SF3B4-201ENST00000271628 RTL9Q8NET4 1388 aa18.36■□□□□ 0.53
SF3B4-201ENST00000271628 TAF5LO75529 589 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 CREB3L3Q68CJ9 461 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 VGLL2Q8N8G2 317 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 ZNF512BQ96KM6 892 aaPredicted RBP18.35■□□□□ 0.53
SF3B4-201ENST00000271628 MPHOSPH8Q99549 860 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 LAMB2P55268 1798 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 PSMA5P28066 241 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 ZNF589Q86UQ0 364 aaPredicted RBP18.35■□□□□ 0.53
SF3B4-201ENST00000271628 SEPT12Q8IYM1 358 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 GBP4Q96PP9 640 aa18.35■□□□□ 0.53
SF3B4-201ENST00000271628 ISY1Q9ULR0 285 aaKnown RBP18.35■□□□□ 0.53
SF3B4-201ENST00000271628 SSFA2P28290 1259 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 FAM182BQ5T319 152 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 TNPO1Q92973 898 aaKnown RBP18.34■□□□□ 0.53
SF3B4-201ENST00000271628 TTC14Q96N46 770 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 ZSWIM6Q9HCJ5 1215 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 NARFQ9UHQ1 456 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 DDX60Q8IY21 1712 aaKnown RBP18.34■□□□□ 0.53
SF3B4-201ENST00000271628 CASTP20810 708 aaKnown RBP18.34■□□□□ 0.53
SF3B4-201ENST00000271628 ADORA1P30542 326 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 TSGA10IPQ3SY00 556 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 USPL1Q5W0Q7 1092 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 RTCBQ9Y3I0 505 aaKnown RBP18.34■□□□□ 0.53
SF3B4-201ENST00000271628 CYP46A1Q9Y6A2 500 aa18.34■□□□□ 0.53
SF3B4-201ENST00000271628 SBF2Q86WG5 1849 aa18.33■□□□□ 0.53
SF3B4-201ENST00000271628 LRP5O75197 1615 aa18.33■□□□□ 0.52
SF3B4-201ENST00000271628 ZFYP08048 801 aaPredicted RBP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 IGHMBP2P38935 993 aaKnown RBP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 KCNQ4P56696 695 aa18.33■□□□□ 0.52
SF3B4-201ENST00000271628 FKBP4Q02790 459 aaKnown RBP eCLIP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 PUM3Q15397 648 aaKnown RBP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 VPS53Q5VIR6 699 aa18.33■□□□□ 0.52
SF3B4-201ENST00000271628 JAKMIP1Q96N16 626 aaKnown RBP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 QTRT2Q9H974 415 aaKnown RBP18.33■□□□□ 0.52
SF3B4-201ENST00000271628 LY75O60449 1722 aa18.33■□□□□ 0.52
SF3B4-201ENST00000271628 SLC27A2O14975 620 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 LPIN2Q92539 896 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 U3KPZ7 1027 aaPredicted RBP18.32■□□□□ 0.52
SF3B4-201ENST00000271628 RNF113AO15541 343 aaKnown RBP18.32■□□□□ 0.52
SF3B4-201ENST00000271628 ZPR1O75312 459 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 KRT32Q14532 448 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 ZMYM1Q5SVZ6 1142 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 RUFY3Q7L099 469 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 NYXQ9GZU5 481 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 SCN7AQ01118 1682 aa18.32■□□□□ 0.52
SF3B4-201ENST00000271628 GNPATO15228 680 aa18.31■□□□□ 0.52
SF3B4-201ENST00000271628 SKOR2Q2VWA4 1001 aaPredicted RBP18.31■□□□□ 0.52
SF3B4-201ENST00000271628 ZGPATQ8N5A5 531 aaKnown RBP18.31■□□□□ 0.52
SF3B4-201ENST00000271628 BCL11BQ9C0K0 894 aaPredicted RBP18.31■□□□□ 0.52
SF3B4-201ENST00000271628 LIMCH1Q9UPQ0 1083 aa18.31■□□□□ 0.52
SF3B4-201ENST00000271628 AK2P54819 239 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 ADCK5Q3MIX3 580 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 CLEC17AQ6ZS10 378 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 SEC62Q99442 399 aaKnown RBP18.3■□□□□ 0.52
SF3B4-201ENST00000271628 CDC5LQ99459 802 aaKnown RBP18.3■□□□□ 0.52
SF3B4-201ENST00000271628 XRCC6P12956 609 aaKnown RBP eCLIP18.3■□□□□ 0.52
SF3B4-201ENST00000271628 TTF1Q15361 905 aaPredicted RBP18.3■□□□□ 0.52
SF3B4-201ENST00000271628 SETDB2Q96T68 719 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 DSCC1Q9BVC3 393 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 PDRG1Q9NUG6 133 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 TAF1LQ8IZX4 1826 aa18.3■□□□□ 0.52
SF3B4-201ENST00000271628 RPAP1Q9BWH6 1393 aaPredicted RBP18.3■□□□□ 0.52
SF3B4-201ENST00000271628 UQCRFS1P1P0C7P4 283 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 FGFR2P21802 821 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 GTF2E1P29083 439 aaPredicted RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 MRE11P49959 708 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 SF3B3Q15393 1217 aaKnown RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 GZF1Q9H116 711 aaPredicted RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 SEC31BQ9NQW1 1179 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 CYP2E1P05181 493 aaPredicted RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 SLC5A1P13866 664 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms