RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SPTY2D1Q68D10 685 aaPredicted RBP12.33□□□□□ -0.43
CD44-201ENST00000263398 PAF1Q8N7H5 531 aa12.33□□□□□ -0.43
CD44-201ENST00000263398 CTAGE1Q96RT6 745 aa12.33□□□□□ -0.43
CD44-201ENST00000263398 A0A1W2PP64 1363 aa12.33□□□□□ -0.43
CD44-201ENST00000263398 UHRF1BP1Q6BDS2 1440 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 CREB3L3Q68CJ9 461 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 CUL5Q93034 780 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 TMX1Q9H3N1 280 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 SHANK2Q9UPX8 1470 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 RNF123Q5XPI4 1314 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 SPTLC2O15270 562 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 CALRP27797 417 aaKnown RBP12.33□□□□□ -0.44
CD44-201ENST00000263398 GBP2P32456 591 aaPredicted RBP12.33□□□□□ -0.44
CD44-201ENST00000263398 DNA2P51530 1060 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 RTN1Q16799 776 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 CCDC178Q5BJE1 867 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 AOPEPQ8N6M6 819 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 DYDC1Q8WWB3 177 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 TRIM47Q96LD4 638 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 CRNKL1Q9BZJ0 848 aaKnown RBP12.33□□□□□ -0.44
CD44-201ENST00000263398 PAG1Q9NWQ8 432 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 KDM2BQ8NHM5 1336 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 NCKAP5LQ9HCH0 1330 aa12.33□□□□□ -0.44
CD44-201ENST00000263398 MATR3P43243 847 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-201ENST00000263398 IFFO1Q0D2I5 559 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 CETN1Q12798 172 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 LRRC27Q9C0I9 530 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 ZNF518AQ6AHZ1 1483 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 SLC9C2Q5TAH2 1124 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-201ENST00000263398 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-201ENST00000263398 PRC1O43663 620 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 AKR1B10O60218 316 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 SYT1P21579 422 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 CCDC152Q4G0S7 254 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 SPECC1Q5M775 1068 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 KRT222Q8N1A0 295 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
CD44-201ENST00000263398 EYA1Q99502 592 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 FAM107BQ9H098 131 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 DNAI1Q9UI46 699 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 RIMS2Q9UQ26 1411 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 INSRP06213 1382 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 HLTFQ14527 1009 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-201ENST00000263398 DHX32Q7L7V1 743 aaKnown RBP12.32□□□□□ -0.44
CD44-201ENST00000263398 ZCRB1Q8TBF4 217 aaKnown RBP12.32□□□□□ -0.44
CD44-201ENST00000263398 ZSWIM4Q9H7M6 989 aa12.32□□□□□ -0.44
CD44-201ENST00000263398 TRIM21P19474 475 aaKnown RBP12.31□□□□□ -0.44
CD44-201ENST00000263398 TCERG1LQ5VWI1 586 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 PPP1R1BQ9UD71 204 aaPredicted RBP12.31□□□□□ -0.44
CD44-201ENST00000263398 STX8Q9UNK0 236 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 ADGRL2O95490 1459 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 MARCKSP29966 332 aaPredicted RBP12.31□□□□□ -0.44
CD44-201ENST00000263398 GTF2F1P35269 517 aaKnown RBP eCLIP12.31□□□□□ -0.44
CD44-201ENST00000263398 GNAQP50148 359 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 SF3B2Q13435 895 aaKnown RBP12.31□□□□□ -0.44
CD44-201ENST00000263398 RUFY3Q7L099 469 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 PLCD4Q9BRC7 762 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 SRRTQ9BXP5 876 aaKnown RBP12.31□□□□□ -0.44
CD44-201ENST00000263398 CCDC113Q9H0I3 377 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 ARFGAP3Q9NP61 516 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 MAP3K5Q99683 1374 aa12.31□□□□□ -0.44
CD44-201ENST00000263398 CYP7A1P22680 504 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 CWF19L2Q2TBE0 894 aaKnown RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 RRAGBQ5VZM2 374 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 VAT1LQ9HCJ6 419 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 JADE2Q9NQC1 790 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 LMOD1P29536 600 aaPredicted RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 CYLC1P35663 651 aaPredicted RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 AFMP43652 599 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 RTL1A6NKG5 1358 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 GSTTP1A0A1W2PQM5 241 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 TRIM75PA6NK02 468 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 TMCO5BA8MYB1 307 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 ADAMTS2O95450 1211 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 SLC4A4Q9Y6R1 1079 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 ABCC10Q5T3U5 1492 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 SLU7O95391 586 aaKnown RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 PIP4K2BP78356 416 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 MAP2K1Q02750 393 aaPredicted RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 IFIT1BQ5T764 474 aaKnown RBP12.3□□□□□ -0.44
CD44-201ENST00000263398 CTR9Q6PD62 1173 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 EXOC1Q9NV70 894 aa12.3□□□□□ -0.44
CD44-201ENST00000263398 MBD5Q9P267 1494 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 RNF113AO15541 343 aaKnown RBP12.29□□□□□ -0.44
CD44-201ENST00000263398 ATL3Q6DD88 541 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 MICALCLQ6ZW33 695 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 STXBP4Q6ZWJ1 553 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 EHMT1Q9H9B1 1298 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 PTPDC1A2A3K4 754 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 NOP2P46087 812 aaKnown RBP12.29□□□□□ -0.44
CD44-201ENST00000263398 BRAPQ7Z569 592 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 TAOK3Q9H2K8 898 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 PSMA7O14818 248 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.29□□□□□ -0.44
CD44-201ENST00000263398 MAP3K19Q56UN5 1328 aa12.29□□□□□ -0.44
CD44-201ENST00000263398 CKAP4Q07065 602 aaKnown RBP12.28□□□□□ -0.44
CD44-201ENST00000263398 ABCC1P33527 1531 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms