RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 LTN1O94822 1766 aa18.21■□□□□ 0.51
DDX55-201ENST00000238146 LMO7Q8WWI1 1683 aa18.21■□□□□ 0.51
DDX55-201ENST00000238146 BECN2A8MW95 431 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 DDX58O95786 925 aaKnown RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 CEBPAP49715 358 aaPredicted RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 GABPB1Q06547 395 aaPredicted RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 CCDC129Q6ZRS4 1044 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 FILIP1Q7Z7B0 1213 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 ATP5JP18859 108 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 EPHA10Q5JZY3 1008 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 SEC62Q99442 399 aaKnown RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 DDX21Q9NR30 783 aaKnown RBP eCLIP18.2■□□□□ 0.5
DDX55-201ENST00000238146 DBNLQ9UJU6 430 aaKnown RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 NDUFB9Q9Y6M9 179 aa18.2■□□□□ 0.5
DDX55-201ENST00000238146 U3KPZ7 1027 aaPredicted RBP18.2■□□□□ 0.5
DDX55-201ENST00000238146 NAA16Q6N069 864 aaPredicted RBP18.19■□□□□ 0.5
DDX55-201ENST00000238146 ENGASEQ8NFI3 743 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 LLPHQ9BRT6 129 aaKnown RBP18.19■□□□□ 0.5
DDX55-201ENST00000238146 PFKFB2O60825 505 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 PDIA6Q15084 440 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 KMT5BQ4FZB7 885 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 AMOTQ4VCS5 1084 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 C1orf141Q5JVX7 400 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 NSUN7Q8NE18 718 aaKnown RBP18.19■□□□□ 0.5
DDX55-201ENST00000238146 USP28Q96RU2 1077 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 TRMT1Q9NXH9 659 aaKnown RBP18.19■□□□□ 0.5
DDX55-201ENST00000238146 MRC1P22897 1456 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 PXDNQ92626 1479 aa18.19■□□□□ 0.5
DDX55-201ENST00000238146 ZNF609O15014 1411 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 FOSBP53539 338 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 CCDC73Q6ZRK6 1079 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 ZNF771Q7L3S4 317 aaPredicted RBP18.18■□□□□ 0.5
DDX55-201ENST00000238146 ZNF397Q8NF99 534 aaPredicted RBP18.18■□□□□ 0.5
DDX55-201ENST00000238146 ANO10Q9NW15 660 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 CTDNEP1O95476 244 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 KCNA6P17658 529 aa18.18■□□□□ 0.5
DDX55-201ENST00000238146 CCAR2Q8N163 923 aaKnown RBP18.18■□□□□ 0.5
DDX55-201ENST00000238146 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.18■□□□□ 0.5
DDX55-201ENST00000238146 V9GYY5 206 aaPredicted RBP18.18■□□□□ 0.5
DDX55-201ENST00000238146 KINO60870 393 aaKnown RBP18.17■□□□□ 0.5
DDX55-201ENST00000238146 SLFN14P0C7P3 912 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 STOX1Q6ZVD7 989 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 NFAT5O94916 1531 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 ARHGAP23Q9P227 1491 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 FGD1P98174 961 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 FAM160A1Q05DH4 1040 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 RIC3Q7Z5B4 369 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 NCAPD2Q15021 1401 aa18.17■□□□□ 0.5
DDX55-201ENST00000238146 NEURL1BA8MQ27 555 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 MCMDC2Q4G0Z9 681 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 TNNI3KQ59H18 835 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 KCND1Q9NSA2 647 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 FPGT-TNNI3KV9GXZ4 949 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 PTPDC1A2A3K4 754 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 ERCC4Q92889 916 aaPredicted RBP18.16■□□□□ 0.5
DDX55-201ENST00000238146 ERO1AQ96HE7 468 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 COPRSQ9NQ92 184 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 PHF8Q9UPP1 1060 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 RGPD2P0DJD1 1756 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 GCKRQ14397 625 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 AOPEPQ8N6M6 819 aa18.16■□□□□ 0.5
DDX55-201ENST00000238146 DNAJC2Q99543 621 aaKnown RBP18.16■□□□□ 0.5
DDX55-201ENST00000238146 TFCP2Q12800 502 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 CEP57L1Q8IYX8 460 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 FSIP1Q8NA03 581 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 APOBRQ0VD83 1088 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 ELF2Q15723 593 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 FBXO38Q6PIJ6 1188 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 DHX32Q7L7V1 743 aaKnown RBP18.15■□□□□ 0.5
DDX55-201ENST00000238146 NBPF11Q86T75 865 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 KRT222Q8N1A0 295 aa18.15■□□□□ 0.5
DDX55-201ENST00000238146 ERBB3P21860 1342 aa18.14■□□□□ 0.5
DDX55-201ENST00000238146 RFX7Q2KHR2 1363 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 ME1P48163 572 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 RFX5P48382 616 aaPredicted RBP18.14■□□□□ 0.49
DDX55-201ENST00000238146 ATL3Q6DD88 541 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 ZNF396Q96N95 335 aaPredicted RBP18.14■□□□□ 0.49
DDX55-201ENST00000238146 FAM53CQ9NYF3 392 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 OVOS2A0A0G2JMS6 1433 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 PTPN12Q05209 780 aaKnown RBP18.14■□□□□ 0.49
DDX55-201ENST00000238146 NEXNQ0ZGT2 675 aa18.14■□□□□ 0.49
DDX55-201ENST00000238146 ILDR1Q86SU0 546 aaPredicted RBP18.14■□□□□ 0.49
DDX55-201ENST00000238146 SLU7O95391 586 aaKnown RBP18.13■□□□□ 0.49
DDX55-201ENST00000238146 HMGB1P09429 215 aaKnown RBP18.13■□□□□ 0.49
DDX55-201ENST00000238146 GSDMDP57764 484 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 CCT2P78371 535 aaKnown RBP18.13■□□□□ 0.49
DDX55-201ENST00000238146 TERF2Q15554 542 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 DDX46Q7L014 1031 aaKnown RBP18.13■□□□□ 0.49
DDX55-201ENST00000238146 FBXW7Q969H0 707 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 DBNDD2Q9BQY9 259 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 OSBPL5Q9H0X9 879 aaPredicted RBP18.13■□□□□ 0.49
DDX55-201ENST00000238146 PPFIA3O75145 1194 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 HAUS7Q99871 368 aa18.13■□□□□ 0.49
DDX55-201ENST00000238146 EXOSC10Q01780 885 aaKnown RBP18.12■□□□□ 0.49
DDX55-201ENST00000238146 GUCY1B3Q02153 619 aa18.12■□□□□ 0.49
DDX55-201ENST00000238146 SLFNL1Q499Z3 407 aa18.12■□□□□ 0.49
DDX55-201ENST00000238146 PLPPR3Q6T4P5 718 aa18.12■□□□□ 0.49
DDX55-201ENST00000238146 FMR1NBQ8N0W7 255 aaPredicted RBP18.12■□□□□ 0.49
DDX55-201ENST00000238146 KCNH5Q8NCM2 988 aa18.12■□□□□ 0.49
DDX55-201ENST00000238146 MYD88Q99836 296 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms