RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 HMG20BQ9P0W2 317 aa14.6□□□□□ -0.07
NUP88-201ENST00000225696 ANKARQ7Z5J8 1434 aa14.6□□□□□ -0.07
NUP88-201ENST00000225696 NEURL1BA8MQ27 555 aa14.6□□□□□ -0.07
NUP88-201ENST00000225696 C1orf141Q5JVX7 400 aa14.6□□□□□ -0.07
NUP88-201ENST00000225696 DDX46Q7L014 1031 aaKnown RBP14.6□□□□□ -0.07
NUP88-201ENST00000225696 RIC3Q7Z5B4 369 aa14.6□□□□□ -0.07
NUP88-201ENST00000225696 CCAR1Q8IX12 1150 aaKnown RBP14.6□□□□□ -0.07
NUP88-201ENST00000225696 GTPBP4Q9BZE4 634 aaKnown RBP14.6□□□□□ -0.07
NUP88-201ENST00000225696 LMO7Q8WWI1 1683 aa14.59□□□□□ -0.07
NUP88-201ENST00000225696 PDIA4P13667 645 aaKnown RBP14.59□□□□□ -0.07
NUP88-201ENST00000225696 CCT2P78371 535 aaKnown RBP14.59□□□□□ -0.07
NUP88-201ENST00000225696 GUCY1B3Q02153 619 aa14.59□□□□□ -0.07
NUP88-201ENST00000225696 FILIP1Q7Z7B0 1213 aa14.59□□□□□ -0.07
NUP88-201ENST00000225696 DHX40Q8IX18 779 aaKnown RBP14.59□□□□□ -0.07
NUP88-201ENST00000225696 CCDC112Q8NEF3 446 aa14.59□□□□□ -0.07
NUP88-201ENST00000225696 USP28Q96RU2 1077 aa14.59□□□□□ -0.07
NUP88-201ENST00000225696 NCOA5Q9HCD5 579 aaKnown RBP14.59□□□□□ -0.07
NUP88-201ENST00000225696 DDX21Q9NR30 783 aaKnown RBP eCLIP14.59□□□□□ -0.07
NUP88-201ENST00000225696 TRMT1Q9NXH9 659 aaKnown RBP14.59□□□□□ -0.07
NUP88-201ENST00000225696 APOBRQ0VD83 1088 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 GCKRQ14397 625 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 CEP135Q66GS9 1140 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 NSUN7Q8NE18 718 aaKnown RBP14.58□□□□□ -0.07
NUP88-201ENST00000225696 MYD88Q99836 296 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 DBNDD2Q9BQY9 259 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 AXIN2Q9Y2T1 843 aa14.58□□□□□ -0.07
NUP88-201ENST00000225696 PTPN12Q05209 780 aaKnown RBP14.58□□□□□ -0.08
NUP88-201ENST00000225696 TNNI3KQ59H18 835 aa14.58□□□□□ -0.08
NUP88-201ENST00000225696 ILDR1Q86SU0 546 aaPredicted RBP14.58□□□□□ -0.08
NUP88-201ENST00000225696 SMARCC2Q8TAQ2 1214 aa14.58□□□□□ -0.08
NUP88-201ENST00000225696 XAGE3Q8WTP9 111 aa14.58□□□□□ -0.08
NUP88-201ENST00000225696 CHMP4AQ9BY43 222 aa14.58□□□□□ -0.08
NUP88-201ENST00000225696 FPGT-TNNI3KV9GXZ4 949 aa14.58□□□□□ -0.08
NUP88-201ENST00000225696 USP54Q70EL1 1684 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 SKILP12757 684 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 ATP5JP18859 108 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 RFX5P48382 616 aaPredicted RBP14.57□□□□□ -0.08
NUP88-201ENST00000225696 CCZ1BP86790 482 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 CCZ1P86791 482 aaPredicted RBP14.57□□□□□ -0.08
NUP88-201ENST00000225696 COPS6Q7L5N1 327 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 CHST3Q7LGC8 479 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 SYTL4Q96C24 671 aaPredicted RBP14.57□□□□□ -0.08
NUP88-201ENST00000225696 RCOR1Q9UKL0 485 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 ZNF215Q9UL58 517 aaPredicted RBP14.57□□□□□ -0.08
NUP88-201ENST00000225696 GOLGA6L19H0YKK7 550 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 CDC25BP30305 580 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 SARM1Q6SZW1 724 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 NYAP1Q6ZVC0 841 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 ENGASEQ8NFI3 743 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 PAXBP1Q9Y5B6 917 aa14.57□□□□□ -0.08
NUP88-201ENST00000225696 CCDC69A6NI79 296 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 RBM6P78332 1123 aaKnown RBP14.56□□□□□ -0.08
NUP88-201ENST00000225696 PSME1Q06323 249 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 FEZ1Q99689 392 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 ZSCAN16Q9H4T2 348 aaPredicted RBP14.56□□□□□ -0.08
NUP88-201ENST00000225696 OGFRQ9NZT2 677 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 CFAP45Q9UL16 551 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 PTPDC1A2A3K4 754 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 PFKFB2O60825 505 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 DDX58O95786 925 aaKnown RBP14.56□□□□□ -0.08
NUP88-201ENST00000225696 KRT32Q14532 448 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 STX1AQ16623 288 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 KMT5BQ4FZB7 885 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 AMOTQ4VCS5 1084 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 ESCO1Q5FWF5 840 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 MRFAP1L1Q96HT8 127 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 DDX41Q9UJV9 622 aaKnown RBP14.56□□□□□ -0.08
NUP88-201ENST00000225696 HDAC5Q9UQL6 1122 aa14.56□□□□□ -0.08
NUP88-201ENST00000225696 ERBB3P21860 1342 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 FGD1P98174 961 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 SYCP1Q15431 976 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 MCMDC2Q4G0Z9 681 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 NBPF11Q86T75 865 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 AOPEPQ8N6M6 819 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 ANKRD24Q8TF21 1146 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 MRC1P22897 1456 aa14.55□□□□□ -0.08
NUP88-201ENST00000225696 ATP5J2-PTCD1G3V325 749 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 PTCD1O75127 700 aaKnown RBP14.54□□□□□ -0.08
NUP88-201ENST00000225696 GCP02774 474 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 OTUD7BQ6GQQ9 843 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 UBE3BQ7Z3V4 1068 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 KIF18AQ8NI77 898 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 COPRSQ9NQ92 184 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 GPHNQ9NQX3 736 aaPredicted RBP14.54□□□□□ -0.08
NUP88-201ENST00000225696 BECN2A8MW95 431 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 PTPN14Q15678 1187 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 ZNF790Q6PG37 636 aa14.54□□□□□ -0.08
NUP88-201ENST00000225696 NAP1L2Q9ULW6 460 aaPredicted RBP14.54□□□□□ -0.08
NUP88-201ENST00000225696 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
NUP88-201ENST00000225696 NPHP1O15259 732 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 ME1P48163 572 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 ARHGEF25Q86VW2 580 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 FSIP1Q8NA03 581 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 LRRN4CLQ8ND94 238 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 METTL22Q9BUU2 404 aaPredicted RBP14.53□□□□□ -0.08
NUP88-201ENST00000225696 A0A1B0GVL5 298 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 KIF20AO95235 890 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 LMOD2Q6P5Q4 547 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 DHX32Q7L7V1 743 aaKnown RBP14.53□□□□□ -0.08
NUP88-201ENST00000225696 LRP10Q7Z4F1 713 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms