RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Speer4aF8VPX6 267 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Kank4Q6P9J5 1016 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Naa30Q8CES0 364 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Slc4a4O88343 1079 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Nap1l1P28656 391 aaKnown RBP17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Traf3ip1Q149C2 625 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Arglu1Q3UL36 271 aaKnown RBP17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cdc42bpbQ7TT50 1713 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Nucb2P81117 420 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ubash3aQ3V3E1 624 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ripk4Q9ERK0 786 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cops6O88545 324 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Luc7lQ9CYI4 371 aaKnown RBP17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cfap45Q9D9U9 551 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Gm12185Q5NCB2 835 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Unc5clQ6R653 518 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 4930504O13RikQ8C5Z9 145 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Paxbp1P58501 919 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Tex2Q6ZPJ0 1128 aaKnown RBP17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Podxl2Q8CAE9 603 aa17.92■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Eya2O08575 532 aa17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Stx8O88983 236 aa17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Abcd1P48410 736 aa17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Fez2Q6TYB5 348 aa17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ccar2Q8VDP4 922 aaKnown RBP17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ccdc82Q6PG04 518 aa17.91■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 TnksQ6PFX9 1320 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Igsf1Q7TQA1 1317 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Rad23bP54728 416 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Wdr93Q402B2 695 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Trim25Q61510 634 aaKnown RBP17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Pram1Q6BCL1 675 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Zkscan8Q8BSL0 588 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 WtapQ9ER69 396 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Znf704Q9ERQ3 566 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Robo2Q7TPD3 1470 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 MthfsQ9D110 203 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ercc6lQ8BHK9 1240 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cdca7lQ922M5 438 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ankrd13dQ6PD24 605 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ginm1Q91WR6 327 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Antxr1Q9CZ52 562 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 IncenpQ9WU62 880 aa17.9■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Pla2g4fQ50L41 855 aa17.89■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ufl1Q8CCJ3 793 aaKnown RBP17.89■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cfap157Q0VFX2 523 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Iqgap3F8VQ29 1632 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Prl3d2F6R3P9 224 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Casp1P29452 402 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Sycp1Q62209 993 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Syt10Q9R0N4 523 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Fbln2P37889 1221 aa17.89■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Pank2Q3U4S0 443 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ttc12Q8BW49 704 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Znf287Q9EQB9 759 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ampd3O08739 766 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Vps16Q920Q4 839 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 BrapQ99MP8 591 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 IntuQ059U7 942 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 HellsQ60848 821 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Miga2Q8BK03 593 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Taf5lQ91WQ5 589 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ccdc96Q9CR92 584 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Mrps25Q9D125 171 aaKnown RBP17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Vwa3bJ9JI28 736 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Adam1aQ60813 791 aa17.88■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Dennd3A2RT67 1274 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Prl7a2O54831 253 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Letm1Q9Z2I0 738 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 FanccP50652 591 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 TxlnbQ8VBT1 685 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Kiaa1210E9Q0C6 1637 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Itga6Q61739 1091 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Cdca8Q8BHX3 289 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Prr29B1ARI9 187 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Esco1Q69Z69 843 aa17.87■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ano10Q8BH79 659 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Triml1Q8BVP1 470 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 PigbQ9JJQ0 542 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Dapk3O54784 448 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Cnnm2Q3TWN3 875 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Morc2aQ69ZX6 1030 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Erlin2Q8BFZ9 340 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Cep89Q9CZX2 791 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Anxa1P10107 346 aaKnown RBP17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Clcn1Q64347 994 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Syde2E9PUP1 1314 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Dip2cE9PWR4 1557 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Uhrf1bp1B2KF50 1429 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Snrpa1P57784 255 aaKnown RBP17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Hdgfl1Q2VPR5 283 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Rbm26Q6NZN0 1012 aaKnown RBP17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ano6Q6P9J9 911 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ccdc172Q810N9 267 aa17.86■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Sdc2P43407 202 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Terf2ipQ91VL8 393 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Gm45140A0A0N4SUM8 220 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Bach1P97302 739 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Uri1Q3TLD5 531 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Kmt5bQ3U8K7 883 aa17.85■□□□□ 0.45
Retrieved 100 of 22,080 RNA–protein pairs in 77.8 ms